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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80190:CDS:4 | 110 | Chr1: 30159964-30160073 | Arabidopsis thaliana |
AT1G80190:CDS:5 | 172 | Chr1: 30160157-30160328 | Arabidopsis thaliana |
AT1G80190:CDS:6 | 150 | Chr1: 30160430-30160579 | Arabidopsis thaliana |
AT1G80190:CDS:8 | 27 | Chr1: 30161089-30161115 | Arabidopsis thaliana |
AT1G80190:CDS:1 | 75 | Chr1: 30159476-30159550 | Arabidopsis thaliana |
AT1G80190:CDS:2 | 68 | Chr1: 30159800-30159867 | Arabidopsis thaliana |
AT1G80190:CDS:3 | 114 | Chr1: 30159960-30160073 | Arabidopsis thaliana |
AT1G80190:CDS:5.1 | 172 | Chr1: 30160157-30160328 | Arabidopsis thaliana |
AT1G80190:CDS:6.1 | 150 | Chr1: 30160430-30160579 | Arabidopsis thaliana |
AT1G80190:CDS:8.1 | 27 | Chr1: 30161089-30161115 | Arabidopsis thaliana |
AT1G80190:CDS:1.1 | 75 | Chr1: 30159476-30159550 | Arabidopsis thaliana |
AT1G80190:CDS:2.1 | 68 | Chr1: 30159800-30159867 | Arabidopsis thaliana |
AT1G80190:CDS:3.1 | 114 | Chr1: 30159960-30160073 | Arabidopsis thaliana |
AT1G80190:CDS:5.2 | 172 | Chr1: 30160157-30160328 | Arabidopsis thaliana |
AT1G80190:CDS:6.2 | 150 | Chr1: 30160430-30160579 | Arabidopsis thaliana |
AT1G80190:CDS:8.2 | 27 | Chr1: 30161089-30161115 | Arabidopsis thaliana |
AT1G80190:CDS:1.2 | 75 | Chr1: 30159476-30159550 | Arabidopsis thaliana |
AT1G80190:CDS:2.2 | 68 | Chr1: 30159800-30159867 | Arabidopsis thaliana |
AT1G80190:CDS:3.2 | 114 | Chr1: 30159960-30160073 | Arabidopsis thaliana |
AT1G80190:CDS:5.3 | 172 | Chr1: 30160157-30160328 | Arabidopsis thaliana |
AT1G80190:CDS:6.3 | 150 | Chr1: 30160430-30160579 | Arabidopsis thaliana |
AT1G80190:CDS:8.3 | 27 | Chr1: 30161089-30161115 | Arabidopsis thaliana |
AT1G80190:CDS:1.3 | 75 | Chr1: 30159476-30159550 | Arabidopsis thaliana |
AT1G80190:CDS:2.3 | 68 | Chr1: 30159800-30159867 | Arabidopsis thaliana |
AT1G80190:CDS:3.3 | 114 | Chr1: 30159960-30160073 | Arabidopsis thaliana |
AT1G80190:CDS:5.4 | 172 | Chr1: 30160157-30160328 | Arabidopsis thaliana |
AT1G80190:CDS:7 | 195 | Chr1: 30160430-30160624 | Arabidopsis thaliana |
AT1G80190:CDS:1.4 | 75 | Chr1: 30159476-30159550 | Arabidopsis thaliana |
AT1G80190:CDS:2.4 | 68 | Chr1: 30159800-30159867 | Arabidopsis thaliana |
AT1G80190:CDS:3.4 | 114 | Chr1: 30159960-30160073 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80190:exon:2 | 410 | Chr1: 30158923-30159332 | Arabidopsis thaliana |
AT1G80190:exon:9 | 428 | Chr1: 30159440-30159867 | Arabidopsis thaliana |
AT1G80190:exon:1 | 323 | Chr1: 30158923-30159245 | Arabidopsis thaliana |
AT1G80190:exon:4 | 524 | Chr1: 30159027-30159550 | Arabidopsis thaliana |
AT1G80190:exon:3 | 306 | Chr1: 30159027-30159332 | Arabidopsis thaliana |
AT1G80190:exon:8 | 111 | Chr1: 30159440-30159550 | Arabidopsis thaliana |
AT1G80190:exon:16 | 741 | Chr1: 30161089-30161829 | Arabidopsis thaliana |
AT1G80190:exon:5 | 510 | Chr1: 30159041-30159550 | Arabidopsis thaliana |
AT1G80190:exon:14 | 634 | Chr1: 30160430-30161063 | Arabidopsis thaliana |
AT1G80190:exon:6 | 287 | Chr1: 30159046-30159332 | Arabidopsis thaliana |
AT1G80190:exon:7 | 115 | Chr1: 30159436-30159550 | Arabidopsis thaliana |
AT1G80190:exon:10 | 68 | Chr1: 30159800-30159867 | Arabidopsis thaliana |
AT1G80190:exon:11 | 114 | Chr1: 30159960-30160073 | Arabidopsis thaliana |
AT1G80190:exon:12 | 172 | Chr1: 30160157-30160328 | Arabidopsis thaliana |
AT1G80190:exon:13 | 150 | Chr1: 30160430-30160579 | Arabidopsis thaliana |
AT1G80190:exon:15 | 566 | Chr1: 30161089-30161654 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80190:five_prime_UTR:2 | 410 | Chr1: 30158923-30159332 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:9 | 428 | Chr1: 30159440-30159867 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:10 | 4 | Chr1: 30159960-30159963 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:1 | 323 | Chr1: 30158923-30159245 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:4 | 449 | Chr1: 30159027-30159475 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:3 | 306 | Chr1: 30159027-30159332 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:8 | 36 | Chr1: 30159440-30159475 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:5 | 435 | Chr1: 30159041-30159475 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:6 | 287 | Chr1: 30159046-30159332 | Arabidopsis thaliana |
AT1G80190:five_prime_UTR:7 | 40 | Chr1: 30159436-30159475 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G80190.2 | 1840 | Chr1: 30158923-30161654 |
AT1G80190.3 | 1504 | Chr1: 30158923-30161654 |
AT1G80190.4 | 1769 | Chr1: 30159027-30161829 |
AT1G80190.1 | 1662 | Chr1: 30159027-30161829 |
AT1G80190.5 | 1498 | Chr1: 30159041-30161063 |
AT1G80190.6 | 1472 | Chr1: 30159046-30161654 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80190:three_prime_UTR:3 | 714 | Chr1: 30161116-30161829 | Arabidopsis thaliana |
AT1G80190:three_prime_UTR:1 | 439 | Chr1: 30160625-30161063 | Arabidopsis thaliana |
AT1G80190:three_prime_UTR:2 | 539 | Chr1: 30161116-30161654 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8AW53_ARATH A0A384KWN4_ARATH A0A1P8AW89_ARATH | similarity | Belongs to the GINS1/PSF1 family. |
Function
Gene Ontology
cellular component | |
---|---|
GINS complex | ECO |
molecular function | |
No terms in this category. | |
biological process | |
DNA strand elongation involved in mitotic DNA replication | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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