External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80060:CDS:6 | 253 | Chr1: 30116302-30116554 | Arabidopsis thaliana |
AT1G80060:CDS:5 | 83 | Chr1: 30116629-30116711 | Arabidopsis thaliana |
AT1G80060:CDS:4 | 100 | Chr1: 30116805-30116904 | Arabidopsis thaliana |
AT1G80060:CDS:3 | 100 | Chr1: 30116983-30117082 | Arabidopsis thaliana |
AT1G80060:CDS:1 | 196 | Chr1: 30117329-30117524 | Arabidopsis thaliana |
AT1G80060:CDS:6.1 | 253 | Chr1: 30116302-30116554 | Arabidopsis thaliana |
AT1G80060:CDS:5.1 | 83 | Chr1: 30116629-30116711 | Arabidopsis thaliana |
AT1G80060:CDS:4.1 | 100 | Chr1: 30116805-30116904 | Arabidopsis thaliana |
AT1G80060:CDS:3.1 | 100 | Chr1: 30116983-30117082 | Arabidopsis thaliana |
AT1G80060:CDS:1.1 | 196 | Chr1: 30117329-30117524 | Arabidopsis thaliana |
AT1G80060:CDS:6.2 | 253 | Chr1: 30116302-30116554 | Arabidopsis thaliana |
AT1G80060:CDS:5.2 | 83 | Chr1: 30116629-30116711 | Arabidopsis thaliana |
AT1G80060:CDS:4.2 | 100 | Chr1: 30116805-30116904 | Arabidopsis thaliana |
AT1G80060:CDS:2 | 122 | Chr1: 30116983-30117104 | Arabidopsis thaliana |
AT1G80060:CDS:6.3 | 253 | Chr1: 30116302-30116554 | Arabidopsis thaliana |
AT1G80060:CDS:5.3 | 83 | Chr1: 30116629-30116711 | Arabidopsis thaliana |
AT1G80060:CDS:4.3 | 100 | Chr1: 30116805-30116904 | Arabidopsis thaliana |
AT1G80060:CDS:3.2 | 100 | Chr1: 30116983-30117082 | Arabidopsis thaliana |
AT1G80060:CDS:1.2 | 196 | Chr1: 30117329-30117524 | Arabidopsis thaliana |
AT1G80060:CDS:6.4 | 253 | Chr1: 30116302-30116554 | Arabidopsis thaliana |
AT1G80060:CDS:5.4 | 83 | Chr1: 30116629-30116711 | Arabidopsis thaliana |
AT1G80060:CDS:4.4 | 100 | Chr1: 30116805-30116904 | Arabidopsis thaliana |
AT1G80060:CDS:3.3 | 100 | Chr1: 30116983-30117082 | Arabidopsis thaliana |
AT1G80060:CDS:1.3 | 196 | Chr1: 30117329-30117524 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80060:exon:12 | 1774 | Chr1: 30114449-30116222 | Arabidopsis thaliana |
AT1G80060:exon:7 | 257 | Chr1: 30116298-30116554 | Arabidopsis thaliana |
AT1G80060:exon:11 | 2106 | Chr1: 30114449-30116554 | Arabidopsis thaliana |
AT1G80060:exon:3 | 129 | Chr1: 30116983-30117111 | Arabidopsis thaliana |
AT1G80060:exon:13 | 735 | Chr1: 30114449-30115183 | Arabidopsis thaliana |
AT1G80060:exon:10 | 1288 | Chr1: 30115267-30116554 | Arabidopsis thaliana |
AT1G80060:exon:1 | 317 | Chr1: 30117329-30117645 | Arabidopsis thaliana |
AT1G80060:exon:9 | 21 | Chr1: 30115419-30115439 | Arabidopsis thaliana |
AT1G80060:exon:8 | 403 | Chr1: 30116152-30116554 | Arabidopsis thaliana |
AT1G80060:exon:6 | 83 | Chr1: 30116629-30116711 | Arabidopsis thaliana |
AT1G80060:exon:5 | 100 | Chr1: 30116805-30116904 | Arabidopsis thaliana |
AT1G80060:exon:4 | 100 | Chr1: 30116983-30117082 | Arabidopsis thaliana |
AT1G80060:exon:2 | 313 | Chr1: 30117329-30117641 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80060:five_prime_UTR:4 | 7 | Chr1: 30117105-30117111 | Arabidopsis thaliana |
AT1G80060:five_prime_UTR:3 | 317 | Chr1: 30117329-30117645 | Arabidopsis thaliana |
AT1G80060:five_prime_UTR:1 | 121 | Chr1: 30117525-30117645 | Arabidopsis thaliana |
AT1G80060:five_prime_UTR:2 | 117 | Chr1: 30117525-30117641 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G80060.3 | 2706 | Chr1: 30114449-30117645 |
AT1G80060.4 | 2631 | Chr1: 30114449-30117645 |
AT1G80060.2 | 2735 | Chr1: 30114449-30117645 |
AT1G80060.1 | 2623 | Chr1: 30114449-30117645 |
AT1G80060.5 | 1020 | Chr1: 30115419-30117641 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80060:three_prime_UTR:6 | 1774 | Chr1: 30114449-30116222 | Arabidopsis thaliana |
AT1G80060:three_prime_UTR:1 | 4 | Chr1: 30116298-30116301 | Arabidopsis thaliana |
AT1G80060:three_prime_UTR:5 | 1853 | Chr1: 30114449-30116301 | Arabidopsis thaliana |
AT1G80060:three_prime_UTR:7 | 735 | Chr1: 30114449-30115183 | Arabidopsis thaliana |
AT1G80060:three_prime_UTR:4 | 1035 | Chr1: 30115267-30116301 | Arabidopsis thaliana |
AT1G80060:three_prime_UTR:3 | 21 | Chr1: 30115419-30115439 | Arabidopsis thaliana |
AT1G80060:three_prime_UTR:2 | 150 | Chr1: 30116152-30116301 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
mRNA splicing, via spliceosome | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...