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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79690:CDS:1 | 65 | Chr1: 29985360-29985424 | Arabidopsis thaliana |
AT1G79690:CDS:2 | 180 | Chr1: 29985777-29985956 | Arabidopsis thaliana |
AT1G79690:CDS:3 | 78 | Chr1: 29986029-29986106 | Arabidopsis thaliana |
AT1G79690:CDS:4 | 97 | Chr1: 29986299-29986395 | Arabidopsis thaliana |
AT1G79690:CDS:5 | 134 | Chr1: 29986483-29986616 | Arabidopsis thaliana |
AT1G79690:CDS:6 | 82 | Chr1: 29986790-29986871 | Arabidopsis thaliana |
AT1G79690:CDS:7 | 87 | Chr1: 29986986-29987072 | Arabidopsis thaliana |
AT1G79690:CDS:8 | 107 | Chr1: 29987162-29987268 | Arabidopsis thaliana |
AT1G79690:CDS:9 | 172 | Chr1: 29987471-29987642 | Arabidopsis thaliana |
AT1G79690:CDS:10 | 248 | Chr1: 29987728-29987975 | Arabidopsis thaliana |
AT1G79690:CDS:11 | 82 | Chr1: 29988078-29988159 | Arabidopsis thaliana |
AT1G79690:CDS:12 | 66 | Chr1: 29988339-29988404 | Arabidopsis thaliana |
AT1G79690:CDS:13 | 78 | Chr1: 29988540-29988617 | Arabidopsis thaliana |
AT1G79690:CDS:14 | 96 | Chr1: 29988719-29988814 | Arabidopsis thaliana |
AT1G79690:CDS:15 | 107 | Chr1: 29988905-29989011 | Arabidopsis thaliana |
AT1G79690:CDS:16 | 169 | Chr1: 29989091-29989259 | Arabidopsis thaliana |
AT1G79690:CDS:17 | 84 | Chr1: 29989360-29989443 | Arabidopsis thaliana |
AT1G79690:CDS:18 | 95 | Chr1: 29989518-29989612 | Arabidopsis thaliana |
AT1G79690:CDS:19 | 91 | Chr1: 29989693-29989783 | Arabidopsis thaliana |
AT1G79690:CDS:20 | 147 | Chr1: 29989869-29990015 | Arabidopsis thaliana |
AT1G79690:CDS:21 | 54 | Chr1: 29990118-29990171 | Arabidopsis thaliana |
AT1G79690:CDS:1.1 | 65 | Chr1: 29985360-29985424 | Arabidopsis thaliana |
AT1G79690:CDS:2.1 | 180 | Chr1: 29985777-29985956 | Arabidopsis thaliana |
AT1G79690:CDS:3.1 | 78 | Chr1: 29986029-29986106 | Arabidopsis thaliana |
AT1G79690:CDS:4.1 | 97 | Chr1: 29986299-29986395 | Arabidopsis thaliana |
AT1G79690:CDS:5.1 | 134 | Chr1: 29986483-29986616 | Arabidopsis thaliana |
AT1G79690:CDS:6.1 | 82 | Chr1: 29986790-29986871 | Arabidopsis thaliana |
AT1G79690:CDS:7.1 | 87 | Chr1: 29986986-29987072 | Arabidopsis thaliana |
AT1G79690:CDS:8.1 | 107 | Chr1: 29987162-29987268 | Arabidopsis thaliana |
AT1G79690:CDS:9.1 | 172 | Chr1: 29987471-29987642 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79690:exon:1 | 379 | Chr1: 29985046-29985424 | Arabidopsis thaliana |
AT1G79690:exon:24 | 271 | Chr1: 29990118-29990388 | Arabidopsis thaliana |
AT1G79690:exon:2 | 114 | Chr1: 29985129-29985242 | Arabidopsis thaliana |
AT1G79690:exon:3 | 93 | Chr1: 29985332-29985424 | Arabidopsis thaliana |
AT1G79690:exon:4 | 180 | Chr1: 29985777-29985956 | Arabidopsis thaliana |
AT1G79690:exon:5 | 78 | Chr1: 29986029-29986106 | Arabidopsis thaliana |
AT1G79690:exon:6 | 97 | Chr1: 29986299-29986395 | Arabidopsis thaliana |
AT1G79690:exon:7 | 134 | Chr1: 29986483-29986616 | Arabidopsis thaliana |
AT1G79690:exon:8 | 82 | Chr1: 29986790-29986871 | Arabidopsis thaliana |
AT1G79690:exon:9 | 87 | Chr1: 29986986-29987072 | Arabidopsis thaliana |
AT1G79690:exon:10 | 107 | Chr1: 29987162-29987268 | Arabidopsis thaliana |
AT1G79690:exon:11 | 172 | Chr1: 29987471-29987642 | Arabidopsis thaliana |
AT1G79690:exon:12 | 248 | Chr1: 29987728-29987975 | Arabidopsis thaliana |
AT1G79690:exon:13 | 82 | Chr1: 29988078-29988159 | Arabidopsis thaliana |
AT1G79690:exon:14 | 66 | Chr1: 29988339-29988404 | Arabidopsis thaliana |
AT1G79690:exon:15 | 78 | Chr1: 29988540-29988617 | Arabidopsis thaliana |
AT1G79690:exon:16 | 96 | Chr1: 29988719-29988814 | Arabidopsis thaliana |
AT1G79690:exon:17 | 107 | Chr1: 29988905-29989011 | Arabidopsis thaliana |
AT1G79690:exon:18 | 169 | Chr1: 29989091-29989259 | Arabidopsis thaliana |
AT1G79690:exon:19 | 84 | Chr1: 29989360-29989443 | Arabidopsis thaliana |
AT1G79690:exon:20 | 95 | Chr1: 29989518-29989612 | Arabidopsis thaliana |
AT1G79690:exon:21 | 91 | Chr1: 29989693-29989783 | Arabidopsis thaliana |
AT1G79690:exon:22 | 147 | Chr1: 29989869-29990015 | Arabidopsis thaliana |
AT1G79690:exon:23 | 54 | Chr1: 29990118-29990171 | Arabidopsis thaliana |
AT1G79700:exon:13 | 490 | Chr1: 29990336-29990825 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79690:five_prime_UTR:1 | 314 | Chr1: 29985046-29985359 | Arabidopsis thaliana |
AT1G79690:five_prime_UTR:2 | 114 | Chr1: 29985129-29985242 | Arabidopsis thaliana |
AT1G79690:five_prime_UTR:3 | 28 | Chr1: 29985332-29985359 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G79700 | locus:2017829 | WRI4 | WRINKLED 4 | 3431 | Chr1: 29990336-29993766 | A. thaliana | Integrase-type DNA-binding superfamily protein;(source:Araport11) | WRI4 encodes an AP2/ERF-type transcriptional activator that specifically controls cuticular wax biosynthesis in Arabidopsis stems. It also functions to activate transcription of genes involved fatty acid biosynthesis during seed and flower development as well as stem wax biosynthesis. Targets identified by ChIP-seq include: LACS1, KCR1, PAS2, ECR, and WSD1. | Integrase-type DNA-binding superfamily protein | WRI4 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G79690.1 | 2850 | Chr1: 29985046-29990388 |
AT1G79690.2 | 2461 | Chr1: 29985129-29990171 |
AT1G79700.1 | 1082 | Chr1: 29990336-29993724 |
AT1G79700.2 | 1154 | Chr1: 29990336-29993766 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G79690:three_prime_UTR:1 | 217 | Chr1: 29990172-29990388 | Arabidopsis thaliana |
AT1G79700:three_prime_UTR:1 | 104 | Chr1: 29990336-29990439 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NUDT3_ARATH-2 NUDT3_ARATH | function | Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. |
NUDT3_ARATH-2 NUDT3_ARATH | similarity | Belongs to the Nudix hydrolase family. |
NUDT3_ARATH-2 NUDT3_ARATH | tissue specificity | Expressed in roots, stems and, at lower level, leaves. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
cytosol | ECO |
mitochondrion | ECO |
molecular function | |
phosphatase activity | ECO |
metal ion binding | ECO |
dipeptidyl-peptidase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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