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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78960:CDS:1 | 204 | Chr1: 29696722-29696925 | Arabidopsis thaliana |
AT1G78960:CDS:2 | 186 | Chr1: 29697360-29697545 | Arabidopsis thaliana |
AT1G78960:CDS:3 | 90 | Chr1: 29697675-29697764 | Arabidopsis thaliana |
AT1G78960:CDS:5 | 198 | Chr1: 29697861-29698058 | Arabidopsis thaliana |
AT1G78960:CDS:6 | 85 | Chr1: 29698146-29698230 | Arabidopsis thaliana |
AT1G78960:CDS:7 | 167 | Chr1: 29698350-29698516 | Arabidopsis thaliana |
AT1G78960:CDS:8 | 192 | Chr1: 29698599-29698790 | Arabidopsis thaliana |
AT1G78960:CDS:9 | 114 | Chr1: 29698878-29698991 | Arabidopsis thaliana |
AT1G78960:CDS:10 | 120 | Chr1: 29699068-29699187 | Arabidopsis thaliana |
AT1G78960:CDS:11 | 123 | Chr1: 29699269-29699391 | Arabidopsis thaliana |
AT1G78960:CDS:12 | 99 | Chr1: 29699480-29699578 | Arabidopsis thaliana |
AT1G78960:CDS:13 | 57 | Chr1: 29699661-29699717 | Arabidopsis thaliana |
AT1G78960:CDS:14 | 191 | Chr1: 29699832-29700022 | Arabidopsis thaliana |
AT1G78960:CDS:15 | 178 | Chr1: 29700105-29700282 | Arabidopsis thaliana |
AT1G78960:CDS:16 | 81 | Chr1: 29700378-29700458 | Arabidopsis thaliana |
AT1G78960:CDS:17 | 84 | Chr1: 29700555-29700638 | Arabidopsis thaliana |
AT1G78960:CDS:19 | 123 | Chr1: 29700902-29701024 | Arabidopsis thaliana |
AT1G78960:CDS:1.1 | 204 | Chr1: 29696722-29696925 | Arabidopsis thaliana |
AT1G78960:CDS:2.1 | 186 | Chr1: 29697360-29697545 | Arabidopsis thaliana |
AT1G78960:CDS:3.1 | 90 | Chr1: 29697675-29697764 | Arabidopsis thaliana |
AT1G78960:CDS:5.1 | 198 | Chr1: 29697861-29698058 | Arabidopsis thaliana |
AT1G78960:CDS:6.1 | 85 | Chr1: 29698146-29698230 | Arabidopsis thaliana |
AT1G78960:CDS:7.1 | 167 | Chr1: 29698350-29698516 | Arabidopsis thaliana |
AT1G78960:CDS:8.1 | 192 | Chr1: 29698599-29698790 | Arabidopsis thaliana |
AT1G78960:CDS:9.1 | 114 | Chr1: 29698878-29698991 | Arabidopsis thaliana |
AT1G78960:CDS:10.1 | 120 | Chr1: 29699068-29699187 | Arabidopsis thaliana |
AT1G78960:CDS:11.1 | 123 | Chr1: 29699269-29699391 | Arabidopsis thaliana |
AT1G78960:CDS:12.1 | 99 | Chr1: 29699480-29699578 | Arabidopsis thaliana |
AT1G78960:CDS:13.1 | 57 | Chr1: 29699661-29699717 | Arabidopsis thaliana |
AT1G78960:CDS:14.1 | 191 | Chr1: 29699832-29700022 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78960:exon:2 | 532 | Chr1: 29696394-29696925 | Arabidopsis thaliana |
AT1G78960:exon:1 | 109 | Chr1: 29696394-29696502 | Arabidopsis thaliana |
AT1G78960:exon:25 | 538 | Chr1: 29700902-29701439 | Arabidopsis thaliana |
AT1G78960:exon:3 | 80 | Chr1: 29696434-29696513 | Arabidopsis thaliana |
AT1G78960:exon:5 | 218 | Chr1: 29696708-29696925 | Arabidopsis thaliana |
AT1G78960:exon:23 | 420 | Chr1: 29700902-29701321 | Arabidopsis thaliana |
AT1G78960:exon:4 | 456 | Chr1: 29696470-29696925 | Arabidopsis thaliana |
AT1G78960:exon:7 | 186 | Chr1: 29697360-29697545 | Arabidopsis thaliana |
AT1G78960:exon:22 | 856 | Chr1: 29700555-29701410 | Arabidopsis thaliana |
AT1G78960:exon:6 | 212 | Chr1: 29697334-29697545 | Arabidopsis thaliana |
AT1G78960:exon:8 | 90 | Chr1: 29697675-29697764 | Arabidopsis thaliana |
AT1G78960:exon:9 | 198 | Chr1: 29697861-29698058 | Arabidopsis thaliana |
AT1G78960:exon:10 | 85 | Chr1: 29698146-29698230 | Arabidopsis thaliana |
AT1G78960:exon:11 | 167 | Chr1: 29698350-29698516 | Arabidopsis thaliana |
AT1G78960:exon:12 | 192 | Chr1: 29698599-29698790 | Arabidopsis thaliana |
AT1G78960:exon:13 | 114 | Chr1: 29698878-29698991 | Arabidopsis thaliana |
AT1G78960:exon:14 | 120 | Chr1: 29699068-29699187 | Arabidopsis thaliana |
AT1G78960:exon:15 | 123 | Chr1: 29699269-29699391 | Arabidopsis thaliana |
AT1G78960:exon:16 | 99 | Chr1: 29699480-29699578 | Arabidopsis thaliana |
AT1G78960:exon:17 | 57 | Chr1: 29699661-29699717 | Arabidopsis thaliana |
AT1G78960:exon:18 | 191 | Chr1: 29699832-29700022 | Arabidopsis thaliana |
AT1G78960:exon:19 | 178 | Chr1: 29700105-29700282 | Arabidopsis thaliana |
AT1G78960:exon:20 | 81 | Chr1: 29700378-29700458 | Arabidopsis thaliana |
AT1G78960:exon:21 | 84 | Chr1: 29700555-29700638 | Arabidopsis thaliana |
AT1G78960:exon:24 | 509 | Chr1: 29700902-29701410 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78960:five_prime_UTR:2 | 328 | Chr1: 29696394-29696721 | Arabidopsis thaliana |
AT1G78960:five_prime_UTR:1 | 109 | Chr1: 29696394-29696502 | Arabidopsis thaliana |
AT1G78960:five_prime_UTR:3 | 80 | Chr1: 29696434-29696513 | Arabidopsis thaliana |
AT1G78960:five_prime_UTR:5 | 14 | Chr1: 29696708-29696721 | Arabidopsis thaliana |
AT1G78960:five_prime_UTR:4 | 252 | Chr1: 29696470-29696721 | Arabidopsis thaliana |
AT1G78960:five_prime_UTR:6 | 212 | Chr1: 29697334-29697545 | Arabidopsis thaliana |
AT1G78960:five_prime_UTR:7 | 63 | Chr1: 29697675-29697737 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G78960.2 | 3035 | Chr1: 29696394-29701439 |
AT1G78960.1 | 2830 | Chr1: 29696394-29701439 |
AT1G78960.3 | 2683 | Chr1: 29696434-29701321 |
AT1G78960.4 | 3193 | Chr1: 29696470-29701410 |
AT1G78960.5 | 2500 | Chr1: 29697334-29701410 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G78960:three_prime_UTR:4 | 415 | Chr1: 29701025-29701439 | Arabidopsis thaliana |
AT1G78960:three_prime_UTR:2 | 297 | Chr1: 29701025-29701321 | Arabidopsis thaliana |
AT1G78960:three_prime_UTR:1 | 724 | Chr1: 29700687-29701410 | Arabidopsis thaliana |
AT1G78960:three_prime_UTR:3 | 386 | Chr1: 29701025-29701410 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
LUP2_ARATH | function | Multifunctional enzyme that converts oxidosqualene to nine different triterpenes, mainly lupeol, beta-amyrin and alpha-amyrin in a 15:50:30 ratio. |
A0A1P8AVI0_ARATH LUP2_ARATH A0A1P8AVK7_ARATH | similarity | Belongs to the terpene cyclase/mutase family. |
Function
Gene Ontology
cellular component | |
---|---|
lipid droplet | ECO |
molecular function | |
beta-amyrin synthase activity | ECO |
lupeol synthase activity | ECO |
biological process | |
triterpenoid biosynthetic process | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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