help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.Your session has expired. If you were not logged in, your data (including query history and any lists you made) has been cleared.

Gene : NCED9 A. thaliana

DB identifier  ? AT1G78390 Secondary Identifier  ? locus:2032085
Name  ? nine-cis-epoxycarotenoid dioxygenase 9 Brief Description  nine-cis-epoxycarotenoid dioxygenase 9
TAIR Computational Description  nine-cis-epoxycarotenoid dioxygenase 9;(source:Araport11)
TAIR Curator Summary  Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
TAIR Short Description  nine-cis-epoxycarotenoid dioxygenase 9
TAIR Aliases  ATNCED9, NCED9

3 Gene Rifs

1 Organism

24 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2171  
Location: Chr1:29490705-29492875 reverse strand

Gene models - NCED9 AT1G78390

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
NCED9_ARATH developmental stage Expressed in seeds at early and mid-maturation stages.
NCED9_ARATH function Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids. Contributes probably to abscisic acid synthesis for the induction of seed dormancy.
NCED9_ARATH similarity Belongs to the carotenoid oxygenase family.
NCED9_ARATH tissue specificity Expressed in developing siliques, embryo and endosperm.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast stroma  ? ECO  
molecular function
9-cis-epoxycarotenoid dioxygenase activity  ? ECO  
metal ion binding  ? ECO  
biological process
abscisic acid biosynthetic process  ? ECO  
seed dormancy process  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets