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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 136, Exons: 32, Five Prime UTRs: 3, Gene: 1, mRNAs: 7, Three Prime UTR: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77800:CDS:1 | 1249 | Chr1: 29253800-29255048 | Arabidopsis thaliana |
AT1G77800:CDS:3 | 86 | Chr1: 29255385-29255470 | Arabidopsis thaliana |
AT1G77800:CDS:6 | 348 | Chr1: 29255544-29255891 | Arabidopsis thaliana |
AT1G77800:CDS:8 | 84 | Chr1: 29255963-29256046 | Arabidopsis thaliana |
AT1G77800:CDS:10 | 378 | Chr1: 29256138-29256515 | Arabidopsis thaliana |
AT1G77800:CDS:12 | 58 | Chr1: 29256737-29256794 | Arabidopsis thaliana |
AT1G77800:CDS:13 | 130 | Chr1: 29256953-29257082 | Arabidopsis thaliana |
AT1G77800:CDS:14 | 131 | Chr1: 29257184-29257314 | Arabidopsis thaliana |
AT1G77800:CDS:15 | 171 | Chr1: 29257379-29257549 | Arabidopsis thaliana |
AT1G77800:CDS:16 | 248 | Chr1: 29257645-29257892 | Arabidopsis thaliana |
AT1G77800:CDS:17 | 213 | Chr1: 29257990-29258202 | Arabidopsis thaliana |
AT1G77800:CDS:18 | 207 | Chr1: 29258313-29258519 | Arabidopsis thaliana |
AT1G77800:CDS:19 | 54 | Chr1: 29258616-29258669 | Arabidopsis thaliana |
AT1G77800:CDS:20 | 66 | Chr1: 29258756-29258821 | Arabidopsis thaliana |
AT1G77800:CDS:21 | 132 | Chr1: 29258925-29259056 | Arabidopsis thaliana |
AT1G77800:CDS:22 | 54 | Chr1: 29259142-29259195 | Arabidopsis thaliana |
AT1G77800:CDS:23 | 60 | Chr1: 29259310-29259369 | Arabidopsis thaliana |
AT1G77800:CDS:24 | 402 | Chr1: 29259464-29259865 | Arabidopsis thaliana |
AT1G77800:CDS:26 | 207 | Chr1: 29259984-29260190 | Arabidopsis thaliana |
AT1G77800:CDS:1.1 | 1249 | Chr1: 29253800-29255048 | Arabidopsis thaliana |
AT1G77800:CDS:3.1 | 86 | Chr1: 29255385-29255470 | Arabidopsis thaliana |
AT1G77800:CDS:6.1 | 348 | Chr1: 29255544-29255891 | Arabidopsis thaliana |
AT1G77800:CDS:8.1 | 84 | Chr1: 29255963-29256046 | Arabidopsis thaliana |
AT1G77800:CDS:10.1 | 378 | Chr1: 29256138-29256515 | Arabidopsis thaliana |
AT1G77800:CDS:12.1 | 58 | Chr1: 29256737-29256794 | Arabidopsis thaliana |
AT1G77800:CDS:13.1 | 130 | Chr1: 29256953-29257082 | Arabidopsis thaliana |
AT1G77800:CDS:14.1 | 131 | Chr1: 29257184-29257314 | Arabidopsis thaliana |
AT1G77800:CDS:15.1 | 171 | Chr1: 29257379-29257549 | Arabidopsis thaliana |
AT1G77800:CDS:16.1 | 248 | Chr1: 29257645-29257892 | Arabidopsis thaliana |
AT1G77800:CDS:17.1 | 213 | Chr1: 29257990-29258202 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77800:exon:1 | 1717 | Chr1: 29253332-29255048 | Arabidopsis thaliana |
AT1G77800:exon:28 | 207 | Chr1: 29259984-29260190 | Arabidopsis thaliana |
AT1G77800:exon:7 | 178 | Chr1: 29255544-29255721 | Arabidopsis thaliana |
AT1G77800:exon:9 | 89 | Chr1: 29255803-29255891 | Arabidopsis thaliana |
AT1G77800:exon:27 | 426 | Chr1: 29259464-29259889 | Arabidopsis thaliana |
AT1G77800:exon:5 | 86 | Chr1: 29255385-29255470 | Arabidopsis thaliana |
AT1G77800:exon:12 | 378 | Chr1: 29256138-29256515 | Arabidopsis thaliana |
AT1G77800:exon:30 | 204 | Chr1: 29259987-29260190 | Arabidopsis thaliana |
AT1G77800:exon:2 | 1682 | Chr1: 29253367-29255048 | Arabidopsis thaliana |
AT1G77800:exon:29 | 634 | Chr1: 29259984-29260617 | Arabidopsis thaliana |
AT1G77800:exon:3 | 1653 | Chr1: 29253396-29255048 | Arabidopsis thaliana |
AT1G77800:exon:4 | 94 | Chr1: 29255148-29255241 | Arabidopsis thaliana |
AT1G77800:exon:6 | 49 | Chr1: 29255422-29255470 | Arabidopsis thaliana |
AT1G77800:exon:8 | 348 | Chr1: 29255544-29255891 | Arabidopsis thaliana |
AT1G77800:exon:10 | 84 | Chr1: 29255963-29256046 | Arabidopsis thaliana |
AT1G77800:exon:11 | 97 | Chr1: 29256138-29256234 | Arabidopsis thaliana |
AT1G77800:exon:13 | 74 | Chr1: 29256442-29256515 | Arabidopsis thaliana |
AT1G77800:exon:14 | 58 | Chr1: 29256737-29256794 | Arabidopsis thaliana |
AT1G77800:exon:15 | 130 | Chr1: 29256953-29257082 | Arabidopsis thaliana |
AT1G77800:exon:16 | 131 | Chr1: 29257184-29257314 | Arabidopsis thaliana |
AT1G77800:exon:17 | 171 | Chr1: 29257379-29257549 | Arabidopsis thaliana |
AT1G77800:exon:18 | 248 | Chr1: 29257645-29257892 | Arabidopsis thaliana |
AT1G77800:exon:19 | 213 | Chr1: 29257990-29258202 | Arabidopsis thaliana |
AT1G77800:exon:20 | 207 | Chr1: 29258313-29258519 | Arabidopsis thaliana |
AT1G77800:exon:21 | 54 | Chr1: 29258616-29258669 | Arabidopsis thaliana |
AT1G77800:exon:22 | 66 | Chr1: 29258756-29258821 | Arabidopsis thaliana |
AT1G77800:exon:23 | 132 | Chr1: 29258925-29259056 | Arabidopsis thaliana |
AT1G77800:exon:24 | 54 | Chr1: 29259142-29259195 | Arabidopsis thaliana |
AT1G77800:exon:25 | 60 | Chr1: 29259310-29259369 | Arabidopsis thaliana |
AT1G77800:exon:26 | 402 | Chr1: 29259464-29259865 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77800:five_prime_UTR:1 | 468 | Chr1: 29253332-29253799 | Arabidopsis thaliana |
AT1G77800:five_prime_UTR:2 | 433 | Chr1: 29253367-29253799 | Arabidopsis thaliana |
AT1G77800:five_prime_UTR:3 | 404 | Chr1: 29253396-29253799 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G09757 | AT1G09757 | 350 | Chr1: 29255026-29255375 | A. thaliana | Natural antisense transcript overlaps with AT1G77800;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G77800.3 | 4746 | Chr1: 29253332-29260190 |
AT1G77800.5 | 4528 | Chr1: 29253367-29259889 |
AT1G77800.6 | 4447 | Chr1: 29253367-29259889 |
AT1G77800.7 | 4321 | Chr1: 29253367-29259889 |
AT1G77800.4 | 4708 | Chr1: 29253367-29260190 |
AT1G77800.1 | 4988 | Chr1: 29253367-29260617 |
AT1G77800.2 | 4956 | Chr1: 29253396-29260617 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77800:three_prime_UTR:1 | 427 | Chr1: 29260191-29260617 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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