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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77310:CDS:1 | 249 | Chr1: 29051671-29051919 | Arabidopsis thaliana |
AT1G77310:CDS:2 | 87 | Chr1: 29052161-29052247 | Arabidopsis thaliana |
AT1G77310:CDS:3 | 93 | Chr1: 29052397-29052489 | Arabidopsis thaliana |
AT1G77310:CDS:5 | 77 | Chr1: 29052589-29052665 | Arabidopsis thaliana |
AT1G77310:CDS:6 | 130 | Chr1: 29053050-29053179 | Arabidopsis thaliana |
AT1G77310:CDS:7 | 369 | Chr1: 29053261-29053629 | Arabidopsis thaliana |
AT1G77310:CDS:8 | 82 | Chr1: 29053993-29054074 | Arabidopsis thaliana |
AT1G77310:CDS:9 | 113 | Chr1: 29054159-29054271 | Arabidopsis thaliana |
AT1G77310:CDS:10 | 87 | Chr1: 29054363-29054449 | Arabidopsis thaliana |
AT1G77310:CDS:11 | 126 | Chr1: 29054642-29054767 | Arabidopsis thaliana |
AT1G77310:CDS:12 | 135 | Chr1: 29055024-29055158 | Arabidopsis thaliana |
AT1G77310:CDS:13 | 48 | Chr1: 29055263-29055310 | Arabidopsis thaliana |
AT1G77310:CDS:14 | 111 | Chr1: 29055463-29055573 | Arabidopsis thaliana |
AT1G77310:CDS:15 | 447 | Chr1: 29055733-29056179 | Arabidopsis thaliana |
AT1G77310:CDS:4 | 47 | Chr1: 29052443-29052489 | Arabidopsis thaliana |
AT1G77310:CDS:6.1 | 130 | Chr1: 29053050-29053179 | Arabidopsis thaliana |
AT1G77310:CDS:7.1 | 369 | Chr1: 29053261-29053629 | Arabidopsis thaliana |
AT1G77310:CDS:8.1 | 82 | Chr1: 29053993-29054074 | Arabidopsis thaliana |
AT1G77310:CDS:9.1 | 113 | Chr1: 29054159-29054271 | Arabidopsis thaliana |
AT1G77310:CDS:10.1 | 87 | Chr1: 29054363-29054449 | Arabidopsis thaliana |
AT1G77310:CDS:11.1 | 126 | Chr1: 29054642-29054767 | Arabidopsis thaliana |
AT1G77310:CDS:12.1 | 135 | Chr1: 29055024-29055158 | Arabidopsis thaliana |
AT1G77310:CDS:13.1 | 48 | Chr1: 29055263-29055310 | Arabidopsis thaliana |
AT1G77310:CDS:14.1 | 111 | Chr1: 29055463-29055573 | Arabidopsis thaliana |
AT1G77310:CDS:15.1 | 447 | Chr1: 29055733-29056179 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77310:exon:1 | 422 | Chr1: 29051498-29051919 | Arabidopsis thaliana |
AT1G77310:exon:5 | 77 | Chr1: 29052589-29052665 | Arabidopsis thaliana |
AT1G77310:exon:16 | 699 | Chr1: 29055733-29056431 | Arabidopsis thaliana |
AT1G77310:exon:2 | 415 | Chr1: 29051505-29051919 | Arabidopsis thaliana |
AT1G77310:exon:3 | 87 | Chr1: 29052161-29052247 | Arabidopsis thaliana |
AT1G77310:exon:4 | 93 | Chr1: 29052397-29052489 | Arabidopsis thaliana |
AT1G77310:exon:6 | 130 | Chr1: 29053050-29053179 | Arabidopsis thaliana |
AT1G77310:exon:7 | 369 | Chr1: 29053261-29053629 | Arabidopsis thaliana |
AT1G77310:exon:8 | 82 | Chr1: 29053993-29054074 | Arabidopsis thaliana |
AT1G77310:exon:9 | 113 | Chr1: 29054159-29054271 | Arabidopsis thaliana |
AT1G77310:exon:10 | 87 | Chr1: 29054363-29054449 | Arabidopsis thaliana |
AT1G77310:exon:11 | 126 | Chr1: 29054642-29054767 | Arabidopsis thaliana |
AT1G77310:exon:12 | 135 | Chr1: 29055024-29055158 | Arabidopsis thaliana |
AT1G77310:exon:13 | 48 | Chr1: 29055263-29055310 | Arabidopsis thaliana |
AT1G77310:exon:14 | 111 | Chr1: 29055463-29055573 | Arabidopsis thaliana |
AT1G77310:exon:15 | 685 | Chr1: 29055733-29056417 | Arabidopsis thaliana |
AT1G77320:exon:1 | 493 | Chr1: 29056427-29056919 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77310:five_prime_UTR:1 | 173 | Chr1: 29051498-29051670 | Arabidopsis thaliana |
AT1G77310:five_prime_UTR:2 | 415 | Chr1: 29051505-29051919 | Arabidopsis thaliana |
AT1G77310:five_prime_UTR:3 | 87 | Chr1: 29052161-29052247 | Arabidopsis thaliana |
AT1G77310:five_prime_UTR:4 | 46 | Chr1: 29052397-29052442 | Arabidopsis thaliana |
AT1G77320:five_prime_UTR:1 | 313 | Chr1: 29056427-29056739 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G77320 | locus:2031412 | MEI1 | meiosis defective 1 | 6552 | Chr1: 29056427-29062978 | A. thaliana | transcription coactivator;(source:Araport11) | Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair. | transcription coactivators | MEI1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G77310.1 | 2579 | Chr1: 29051498-29056431 |
AT1G77310.2 | 2481 | Chr1: 29051505-29056417 |
AT1G77320.1 | 3488 | Chr1: 29056427-29062966 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G77310:three_prime_UTR:2 | 252 | Chr1: 29056180-29056431 | Arabidopsis thaliana |
AT1G77310:three_prime_UTR:1 | 238 | Chr1: 29056180-29056417 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
UBN2_ARATH | function | May be required for replication-independent chromatin assembly. |
UBN2_ARATH | similarity | Belongs to the ubinuclein family. |
UBN2_ARATH | subcellular location | Localized at rDNA loci in the nucleolus. |
Function
Gene Ontology
cellular component | |
---|---|
nucleolus | ECO |
rDNA protrusion | ECO |
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
chromatin organization | ECO |
Interactions
Interaction Network
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Expression
Co-expression
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Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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