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Gene : TRZ1 A. thaliana

DB identifier  ? AT1G74700 Secondary Identifier  ? locus:2019235
Name  ? tRNAse Z1 Brief Description  tRNAse Z1
TAIR Computational Description  tRNAse Z1;(source:Araport11)
TAIR Curator Summary  Encodes a protein with RNAse Z activity suggesting a role in tRNA processing.
TAIR Short Description  tRNAse Z1
TAIR Aliases  NUZ, TRZ1

1 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2410  
Location: Chr1:28065014-28067423

Gene models - TRZ1 AT1G74700

? Gene models

Transcripts: 1  Exons: 8  Introns: 7 

Overlapping Features

? Genome features that overlap coordinates of this Gene

9 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RNZ1_ARATH function Zinc phosphodiesterase, which displays tRNA 3'-processing endonuclease activity (PubMed:12032089, PubMed:16118225, PubMed:18052196, PubMed:19411372). Involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA (PubMed:12032089, PubMed:18052196, PubMed:19411372). Can use bis-(p-nitophenyl) phosphate (bpNPP) as substrate (PubMed:18052196). Involved in the processing of small nucleolar RNAs (snoRNAs) (PubMed:19420328).
RNZ1_ARATH similarity Belongs to the RNase Z family.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
3'-tRNA processing endoribonuclease activity  ? ECO  
metal ion binding  ? ECO  
biological process
tRNA processing  ? ECO  
tRNA 3'-end processing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets