External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
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- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 39, Exons: 13, Five Prime UTRs: 2, mRNAs: 5, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G74140:CDS:1 | 338 | Chr1: 27876928-27877265 | Arabidopsis thaliana |
AT1G74140:CDS:2 | 43 | Chr1: 27877804-27877846 | Arabidopsis thaliana |
AT1G74140:CDS:4 | 120 | Chr1: 27877996-27878115 | Arabidopsis thaliana |
AT1G74140:CDS:5 | 108 | Chr1: 27878391-27878498 | Arabidopsis thaliana |
AT1G74140:CDS:6 | 57 | Chr1: 27878974-27879030 | Arabidopsis thaliana |
AT1G74140:CDS:7 | 93 | Chr1: 27879178-27879270 | Arabidopsis thaliana |
AT1G74140:CDS:9 | 42 | Chr1: 27879360-27879401 | Arabidopsis thaliana |
AT1G74140:CDS:10 | 96 | Chr1: 27879489-27879584 | Arabidopsis thaliana |
AT1G74140:CDS:1.1 | 338 | Chr1: 27876928-27877265 | Arabidopsis thaliana |
AT1G74140:CDS:3 | 100 | Chr1: 27877804-27877903 | Arabidopsis thaliana |
AT1G74140:CDS:4.1 | 120 | Chr1: 27877996-27878115 | Arabidopsis thaliana |
AT1G74140:CDS:5.1 | 108 | Chr1: 27878391-27878498 | Arabidopsis thaliana |
AT1G74140:CDS:6.1 | 57 | Chr1: 27878974-27879030 | Arabidopsis thaliana |
AT1G74140:CDS:7.1 | 93 | Chr1: 27879178-27879270 | Arabidopsis thaliana |
AT1G74140:CDS:9.1 | 42 | Chr1: 27879360-27879401 | Arabidopsis thaliana |
AT1G74140:CDS:10.1 | 96 | Chr1: 27879489-27879584 | Arabidopsis thaliana |
AT1G74140:CDS:1.2 | 338 | Chr1: 27876928-27877265 | Arabidopsis thaliana |
AT1G74140:CDS:2.1 | 43 | Chr1: 27877804-27877846 | Arabidopsis thaliana |
AT1G74140:CDS:4.2 | 120 | Chr1: 27877996-27878115 | Arabidopsis thaliana |
AT1G74140:CDS:5.2 | 108 | Chr1: 27878391-27878498 | Arabidopsis thaliana |
AT1G74140:CDS:6.2 | 57 | Chr1: 27878974-27879030 | Arabidopsis thaliana |
AT1G74140:CDS:8 | 102 | Chr1: 27879178-27879279 | Arabidopsis thaliana |
AT1G74140:CDS:9.2 | 42 | Chr1: 27879360-27879401 | Arabidopsis thaliana |
AT1G74140:CDS:10.2 | 96 | Chr1: 27879489-27879584 | Arabidopsis thaliana |
AT1G74140:CDS:1.3 | 338 | Chr1: 27876928-27877265 | Arabidopsis thaliana |
AT1G74140:CDS:3.1 | 100 | Chr1: 27877804-27877903 | Arabidopsis thaliana |
AT1G74140:CDS:4.3 | 120 | Chr1: 27877996-27878115 | Arabidopsis thaliana |
AT1G74140:CDS:5.3 | 108 | Chr1: 27878391-27878498 | Arabidopsis thaliana |
AT1G74140:CDS:6.3 | 57 | Chr1: 27878974-27879030 | Arabidopsis thaliana |
AT1G74140:CDS:8.1 | 102 | Chr1: 27879178-27879279 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G74140:exon:8 | 93 | Chr1: 27879178-27879270 | Arabidopsis thaliana |
AT1G74140:exon:12 | 289 | Chr1: 27879489-27879777 | Arabidopsis thaliana |
AT1G74140:exon:3 | 43 | Chr1: 27877804-27877846 | Arabidopsis thaliana |
AT1G74140:exon:1 | 361 | Chr1: 27876905-27877265 | Arabidopsis thaliana |
AT1G74140:exon:10 | 42 | Chr1: 27879360-27879401 | Arabidopsis thaliana |
AT1G74140:exon:13 | 292 | Chr1: 27879489-27879780 | Arabidopsis thaliana |
AT1G74140:exon:2 | 342 | Chr1: 27876924-27877265 | Arabidopsis thaliana |
AT1G74140:exon:4 | 100 | Chr1: 27877804-27877903 | Arabidopsis thaliana |
AT1G74140:exon:5 | 120 | Chr1: 27877996-27878115 | Arabidopsis thaliana |
AT1G74140:exon:6 | 108 | Chr1: 27878391-27878498 | Arabidopsis thaliana |
AT1G74140:exon:7 | 57 | Chr1: 27878974-27879030 | Arabidopsis thaliana |
AT1G74140:exon:9 | 102 | Chr1: 27879178-27879279 | Arabidopsis thaliana |
AT1G74140:exon:11 | 284 | Chr1: 27879489-27879772 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G74140:five_prime_UTR:1 | 23 | Chr1: 27876905-27876927 | Arabidopsis thaliana |
AT1G74140:five_prime_UTR:2 | 4 | Chr1: 27876924-27876927 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G74140.2 | 1113 | Chr1: 27876905-27879777 |
AT1G74140.1 | 1170 | Chr1: 27876905-27879777 |
AT1G74140.3 | 1125 | Chr1: 27876905-27879780 |
AT1G74140.5 | 1182 | Chr1: 27876905-27879780 |
AT1G74140.4 | 1113 | Chr1: 27876924-27879772 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G74140:three_prime_UTR:2 | 193 | Chr1: 27879585-27879777 | Arabidopsis thaliana |
AT1G74140:three_prime_UTR:3 | 196 | Chr1: 27879585-27879780 | Arabidopsis thaliana |
AT1G74140:three_prime_UTR:1 | 188 | Chr1: 27879585-27879772 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE91220 | 70 | Chr1: 27878541-27878610 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE91220:transposon_fragment:1 | 70 | Chr1: 27878541-27878610 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
RBL17_ARATH-5 RBL17_ARATH RBL17_ARATH-3 RBL17_ARATH-4 RBL17_ARATH-2 | function | Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. |
RBL17_ARATH-5 A0A5S9WU79_ARATH RBL17_ARATH RBL17_ARATH-3 RBL17_ARATH-4 RBL17_ARATH-2 | similarity | Belongs to the peptidase S54 family. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast membrane | ECO |
molecular function | |
serine-type endopeptidase activity | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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