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Gene : PDE338 A. thaliana

DB identifier  ? AT1G71720 Secondary Identifier  ? locus:2013051
Name  ? PIGMENT DEFECTIVE 338 Brief Description  Nucleic acid-binding proteins superfamily
TAIR Computational Description  Nucleic acid-binding proteins superfamily;(source:Araport11)
TAIR Curator Summary  Encodes a chloroplast localized protein that regulates the translation of Ycf1 by binding to its mRNA. It is involved in the biogenesis of photosynthetic complexes.
TAIR Short Description  Nucleic acid-binding proteins superfamily
TAIR Aliases  BSF, PBR1, PDE338, RLSB

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2376  
Location: Chr1:26983615-26985990

Gene models - PDE338 AT1G71720

? Gene models

Transcripts: 2  Exons: 15  Introns: 13 

Overlapping Features

? Genome features that overlap coordinates of this Gene

12 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PD338_ARATH PD338_ARATH-2 function RNA-binding protein that acts as an RNA chaperone to remodel RNA structure and activates their translation (PubMed:30962391). Required for seed pigmentation (PubMed:21139083). Necessary for chloroplast development and subsequent photosynthetic electron flow, as well as for non-photochemical quenching (NPQ) (PubMed:27462450). Rubisco regulatory factor which regulates the concerted biogenesis of NDH, PSI (including PsaA, PsaB, PsaD, PsaF, PsaL, PsaG, PsaK and NdhH) and Cytb(6)f (including PetA, PetB, PetC and PetD) complexes (PubMed:24053212, PubMed:27462450, PubMed:30962391). Binds specifically to and involved in the post-transcriptional regulation of plastid-encoded mRNAs (e.g. rbcL, petA, petB, petD and Ycf1), thus modulating expression, cellular localization/compartmentalization, and photosynthetic function (PubMed:24053212, PubMed:27462450, PubMed:30962391).
PD338_ARATH PD338_ARATH-2 similarity Belongs to the bacterial ribosomal protein bS1 family.
PD338_ARATH PD338_ARATH-2 tissue specificity Present in leaves (at protein level) (PubMed:30962391). Confined to leaf chlorenchyma cells (PubMed:24053212).

3 Proteins

Function

Gene Ontology

cellular component
plastid  ? ECO  
mitochondrion  ? ECO  
chloroplast  ? ECO  
molecular function
misfolded RNA binding  ? ECO  
mRNA binding  ? ECO  
RNA folding chaperone  ? ECO  
RNA binding  ? ECO  
biological process
plastid organization  ? ECO  
response to light stimulus  ? ECO  
nonphotochemical quenching  ? ECO  
positive regulation of translation  ? ECO  
RNA stabilization  ? ECO  
plastid translation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets