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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 10, Exons: 10, Five Prime UTRs: 2, Genes: 2, mRNAs: 4, Three Prime UTRs: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G71480:CDS:1 | 339 | Chr1: 26932079-26932417 | Arabidopsis thaliana |
AT1G71480:CDS:3 | 120 | Chr1: 26932507-26932626 | Arabidopsis thaliana |
AT1G71480:CDS:1.1 | 339 | Chr1: 26932079-26932417 | Arabidopsis thaliana |
AT1G71480:CDS:2 | 115 | Chr1: 26932507-26932621 | Arabidopsis thaliana |
AT1G71480:CDS:4 | 82 | Chr1: 26932702-26932783 | Arabidopsis thaliana |
AT1G71480:CDS:6 | 52 | Chr1: 26932878-26932929 | Arabidopsis thaliana |
AT1G71480:CDS:7 | 63 | Chr1: 26933024-26933086 | Arabidopsis thaliana |
AT1G71480:CDS:1.2 | 339 | Chr1: 26932079-26932417 | Arabidopsis thaliana |
AT1G71480:CDS:2.1 | 115 | Chr1: 26932507-26932621 | Arabidopsis thaliana |
AT1G71480:CDS:5 | 86 | Chr1: 26932702-26932787 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G71480:exon:4 | 120 | Chr1: 26932507-26932626 | Arabidopsis thaliana |
AT1G71480:exon:1 | 566 | Chr1: 26931852-26932417 | Arabidopsis thaliana |
AT1G71480:exon:5 | 82 | Chr1: 26932702-26932783 | Arabidopsis thaliana |
AT1G71480:exon:7 | 52 | Chr1: 26932878-26932929 | Arabidopsis thaliana |
AT1G71480:exon:8 | 290 | Chr1: 26933024-26933313 | Arabidopsis thaliana |
AT1G71480:exon:2 | 494 | Chr1: 26931924-26932417 | Arabidopsis thaliana |
AT1G71480:exon:3 | 115 | Chr1: 26932507-26932621 | Arabidopsis thaliana |
AT1G71480:exon:6 | 86 | Chr1: 26932702-26932787 | Arabidopsis thaliana |
AT1G09253:exon:1 | 397 | Chr1: 26932071-26932467 | Arabidopsis thaliana |
AT1G71490:exon:1 | 2921 | Chr1: 26932905-26935825 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G71480:five_prime_UTR:1 | 227 | Chr1: 26931852-26932078 | Arabidopsis thaliana |
AT1G71480:five_prime_UTR:2 | 155 | Chr1: 26931924-26932078 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G09253 | AT1G09253 | 397 | Chr1: 26932071-26932467 | A. thaliana | Natural antisense transcript overlaps with AT1G71480;(source:Araport11) | NULL | ||||
AT1G71490 | locus:2825379 | AT1G71490 | 2921 | Chr1: 26932905-26935825 | A. thaliana | Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11) | NULL | Tetratricopeptide repeat (TPR)-like superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G71480.2 | 686 | Chr1: 26931852-26932626 |
AT1G71480.1 | 1105 | Chr1: 26931852-26933313 |
AT1G71480.3 | 695 | Chr1: 26931924-26932787 |
AT1G71490.1 | 2921 | Chr1: 26932905-26935825 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G71480:three_prime_UTR:1 | 227 | Chr1: 26933087-26933313 | Arabidopsis thaliana |
AT1G71490:three_prime_UTR:1 | 421 | Chr1: 26932905-26933325 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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