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Gene : AT1G71410 A. thaliana

DB identifier  ? AT1G71410 Secondary Identifier  ? locus:2825374
Brief Description  ARM repeat superfamily protein
TAIR Computational Description  ARM repeat superfamily protein;(source:Araport11)
TAIR Curator Summary  One of two paralogs in Arabidopsis.SCYL2B is a membrane localized protein that interacts with components of clathrin-mediated vesicle trafficking pathways. Loss of both SCYL2B and .SCYL2A results in severe growth defects.
TAIR Short Description  ARM repeat superfamily protein
TAIR Aliases  SCYL2B

1 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5007  
Location: Chr1:26912726-26917732 reverse strand

Gene models - AT1G71410 AT1G71410

? Gene models

Transcripts: 2  Exons: 29  Introns: 27 

Overlapping Features

? Genome features that overlap coordinates of this Gene

19 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SCY2B_ARATH developmental stage Expressed in shoot and root vascular tissues (PubMed:28751315). In root cap regions, accumulates in columella cells and lateral root caps (PubMed:28751315). Also observed specialized cell types such as trichomes, guard cells and root hairs (PubMed:28751315).
SCY2B_ARATH function Probably inactive kinase (PubMed:28751315). Component of the AP2-containing clathrin coat that regulates clathrin-dependent trafficking at plasma membrane, TGN and endosomal system (PubMed:28751315). Together with SCYL2B, required for cell growth, plant growth and development (PubMed:28751315). Essential for polarized root hair development probably by mediating the root hair tip localization of cellulose synthase-like D3 (CSLD3) (PubMed:28751315).
SCY2B_ARATH similarity Belongs to the protein kinase superfamily.
SCY2B_ARATH subcellular location Colocalizes with the clathrin heavy chain 1 (CHC1).
SCY2B_ARATH tissue specificity Expressed in roots, seedlings, leaves, stems, flowers, and, at low levels, in siliques.

1 Proteins

Function

Gene Ontology

cellular component
late endosome membrane  ? ECO  
root hair tip  ? ECO  
trans-Golgi network membrane  ? ECO  
Golgi membrane  ? ECO  
molecular function
ATP binding  ? ECO  
protein kinase activity  ? ECO  
clathrin heavy chain binding  ? ECO  
biological process
root hair cell development  ? ECO  
protein phosphorylation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets