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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 6, CDSs: 19, Exons: 23, Five Prime UTRs: 5, Genes: 3, mRNAs: 5, Three Prime UTR: 1
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G09023.1 | 3877 | Chr1: 25921325-25926170 |
AT1G09023.2 | 3793 | Chr1: 25921325-25926170 |
AT1G09023.3 | 4082 | Chr1: 25921325-25926267 |
AT1G09023.4 | 4221 | Chr1: 25921325-25926267 |
AT1G09023.5 | 4193 | Chr1: 25921873-25926170 |
AT1G09023.6 | 4109 | Chr1: 25921873-25926170 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G68940:CDS:7 | 194 | Chr1: 25921453-25921646 | Arabidopsis thaliana |
AT1G68940:CDS:5 | 1479 | Chr1: 25922111-25923589 | Arabidopsis thaliana |
AT1G68940:CDS:4 | 310 | Chr1: 25923721-25924030 | Arabidopsis thaliana |
AT1G68940:CDS:3 | 1203 | Chr1: 25924172-25925374 | Arabidopsis thaliana |
AT1G68940:CDS:8 | 116 | Chr1: 25921453-25921568 | Arabidopsis thaliana |
AT1G68940:CDS:5.1 | 1479 | Chr1: 25922111-25923589 | Arabidopsis thaliana |
AT1G68940:CDS:4.1 | 310 | Chr1: 25923721-25924030 | Arabidopsis thaliana |
AT1G68940:CDS:2 | 1356 | Chr1: 25924172-25925527 | Arabidopsis thaliana |
AT1G68940:CDS:1 | 6 | Chr1: 25925660-25925665 | Arabidopsis thaliana |
AT1G68940:CDS:6 | 1589 | Chr1: 25922001-25923589 | Arabidopsis thaliana |
AT1G68940:CDS:4.2 | 310 | Chr1: 25923721-25924030 | Arabidopsis thaliana |
AT1G68940:CDS:2.1 | 1356 | Chr1: 25924172-25925527 | Arabidopsis thaliana |
AT1G68940:CDS:1.1 | 6 | Chr1: 25925660-25925665 | Arabidopsis thaliana |
AT1G68935:CDS:1 | 55 | Chr1: 25921751-25921805 | Arabidopsis thaliana |
AT1G68935:CDS:2 | 108 | Chr1: 25922423-25922530 | Arabidopsis thaliana |
AT1G68935:CDS:3 | 29 | Chr1: 25922670-25922698 | Arabidopsis thaliana |
AT1G68937:CDS:1 | 25 | Chr1: 25925469-25925493 | Arabidopsis thaliana |
AT1G68937:CDS:2 | 174 | Chr1: 25925617-25925790 | Arabidopsis thaliana |
AT1G68937:CDS:3 | 24 | Chr1: 25926021-25926044 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G09023:exon:3 | 108 | Chr1: 25922423-25922530 | Arabidopsis thaliana |
AT1G09023:exon:5 | 885 | Chr1: 25922670-25923554 | Arabidopsis thaliana |
AT1G09023:exon:1 | 481 | Chr1: 25921325-25921805 | Arabidopsis thaliana |
AT1G09023:exon:4 | 1132 | Chr1: 25922423-25923554 | Arabidopsis thaliana |
AT1G09023:exon:8 | 2608 | Chr1: 25923660-25926267 | Arabidopsis thaliana |
AT1G09023:exon:7 | 2511 | Chr1: 25923660-25926170 | Arabidopsis thaliana |
AT1G09023:exon:2 | 1682 | Chr1: 25921873-25923554 | Arabidopsis thaliana |
AT1G09023:exon:6 | 85 | Chr1: 25923660-25923744 | Arabidopsis thaliana |
AT1G09023:exon:9 | 2342 | Chr1: 25923829-25926170 | Arabidopsis thaliana |
AT1G68940:exon:7 | 194 | Chr1: 25921453-25921646 | Arabidopsis thaliana |
AT1G68940:exon:8 | 116 | Chr1: 25921453-25921568 | Arabidopsis thaliana |
AT1G68940:exon:5 | 1479 | Chr1: 25922111-25923589 | Arabidopsis thaliana |
AT1G68940:exon:1 | 416 | Chr1: 25925660-25926075 | Arabidopsis thaliana |
AT1G68940:exon:6 | 1589 | Chr1: 25922001-25923589 | Arabidopsis thaliana |
AT1G68940:exon:4 | 310 | Chr1: 25923721-25924030 | Arabidopsis thaliana |
AT1G68940:exon:3 | 1356 | Chr1: 25924172-25925527 | Arabidopsis thaliana |
AT1G68940:exon:2 | 186 | Chr1: 25925660-25925845 | Arabidopsis thaliana |
AT1G68935:exon:1 | 281 | Chr1: 25921525-25921805 | Arabidopsis thaliana |
AT1G68935:exon:2 | 108 | Chr1: 25922423-25922530 | Arabidopsis thaliana |
AT1G68935:exon:3 | 425 | Chr1: 25922670-25923094 | Arabidopsis thaliana |
AT1G68937:exon:1 | 25 | Chr1: 25925469-25925493 | Arabidopsis thaliana |
AT1G68937:exon:2 | 174 | Chr1: 25925617-25925790 | Arabidopsis thaliana |
AT1G68937:exon:3 | 24 | Chr1: 25926021-25926044 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G68940:five_prime_UTR:4 | 153 | Chr1: 25925375-25925527 | Arabidopsis thaliana |
AT1G68940:five_prime_UTR:3 | 186 | Chr1: 25925660-25925845 | Arabidopsis thaliana |
AT1G68940:five_prime_UTR:1 | 410 | Chr1: 25925666-25926075 | Arabidopsis thaliana |
AT1G68940:five_prime_UTR:2 | 180 | Chr1: 25925666-25925845 | Arabidopsis thaliana |
AT1G68935:five_prime_UTR:1 | 226 | Chr1: 25921525-25921750 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G09023 | AT1G09023 | 4943 | Chr1: 25921325-25926267 | A. thaliana | Natural antisense transcript overlaps with AT1G68940;(source:Araport11) | NULL | ||||
AT1G68935 | locus:504956106 | AT1G68935 | 1570 | Chr1: 25921525-25923094 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL | ||
AT1G68937 | AT1G68937 | 754 | Chr1: 25925469-25926222 | A. thaliana | hypothetical protein;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G68940.3 | 3525 | Chr1: 25921453-25925845 |
AT1G68940.2 | 3677 | Chr1: 25921453-25926075 |
AT1G68940.1 | 3441 | Chr1: 25922001-25925845 |
AT1G68935.1 | 814 | Chr1: 25921525-25923094 |
AT1G68937.1 | 285 | Chr1: 25925469-25926222 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G68935:three_prime_UTR:1 | 396 | Chr1: 25922699-25923094 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4HZ08_ARATH F4HZ07_ARATH A0A2H1ZEF3_ARATH | pathway | Protein modification; protein ubiquitination. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
ubiquitin-protein transferase activity | ECO |
biological process | |
protein ubiquitination | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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