help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect

Gene : MMD1 A. thaliana

DB identifier  ? AT1G66170 Secondary Identifier  ? locus:2013845
Name  ? MALE MEIOCYTE DEATH 1 Brief Description  RING/FYVE/PHD zinc finger superfamily protein
TAIR Computational Description  RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to nuclear euchromatin specifically during diplotene. Required to regulate microtubule organization and cell cycle transitions during male meiosis, and functions as a direct transcription activator of the meiotic gene TDM1.
TAIR Short Description  RING/FYVE/PHD zinc finger superfamily protein
TAIR Aliases  DUET, MMD1

3 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2810  
Location: Chr1:24638685-24641494 reverse strand

Gene models - MMD1 AT1G66170

? Gene models

Transcripts: 1  Exons: 3  Introns: 2 

Overlapping Features

? Genome features that overlap coordinates of this Gene

4 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
MMD1_ARATH developmental stage First detected in sporogenous cells at late anther stage 4. Maximum levels observed in male meiocytes at anther stage 5, prior to meiosis. Fades out at anther stage 6, during meiosis to disappear later. Also present at low levels in the placenta of very young pistils.
MMD1_ARATH function Probable transcription factor required for chromosome organization and progression during male meiosis (e.g. microsporogenesis) (PubMed:12782723, PubMed:14573517). Necessary for fertility and meiotic progressive compaction of prophase I chromosomes to metaphase I bivalents (PubMed:27385818). Together with JMJ16, promotes gene expression in male meiocytes in an H3K9me3-dependent manner, and contributes to meiotic chromosome condensation by triggering some condensin promoters (e.g. CAP-D3 and CAP-H) (PubMed:27385818, PubMed:32572214).
MMD1_ARATH tissue specificity Expressed in inflorescence, specifically in male meiocytes.

1 Proteins

Function

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets