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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G65540:CDS:14 | 95 | Chr1: 24362382-24362476 | Arabidopsis thaliana |
AT1G65540:CDS:13 | 116 | Chr1: 24362549-24362664 | Arabidopsis thaliana |
AT1G65540:CDS:12 | 83 | Chr1: 24362744-24362826 | Arabidopsis thaliana |
AT1G65540:CDS:11 | 147 | Chr1: 24362911-24363057 | Arabidopsis thaliana |
AT1G65540:CDS:10 | 48 | Chr1: 24363150-24363197 | Arabidopsis thaliana |
AT1G65540:CDS:9 | 195 | Chr1: 24363300-24363494 | Arabidopsis thaliana |
AT1G65540:CDS:8 | 175 | Chr1: 24363641-24363815 | Arabidopsis thaliana |
AT1G65540:CDS:7 | 65 | Chr1: 24363909-24363973 | Arabidopsis thaliana |
AT1G65540:CDS:6 | 127 | Chr1: 24364143-24364269 | Arabidopsis thaliana |
AT1G65540:CDS:5 | 93 | Chr1: 24364431-24364523 | Arabidopsis thaliana |
AT1G65540:CDS:4 | 89 | Chr1: 24364613-24364701 | Arabidopsis thaliana |
AT1G65540:CDS:3 | 147 | Chr1: 24364786-24364932 | Arabidopsis thaliana |
AT1G65540:CDS:2 | 313 | Chr1: 24365098-24365410 | Arabidopsis thaliana |
AT1G65540:CDS:1 | 518 | Chr1: 24365494-24366011 | Arabidopsis thaliana |
AT1G65540:CDS:14.1 | 95 | Chr1: 24362382-24362476 | Arabidopsis thaliana |
AT1G65540:CDS:13.1 | 116 | Chr1: 24362549-24362664 | Arabidopsis thaliana |
AT1G65540:CDS:12.1 | 83 | Chr1: 24362744-24362826 | Arabidopsis thaliana |
AT1G65540:CDS:11.1 | 147 | Chr1: 24362911-24363057 | Arabidopsis thaliana |
AT1G65540:CDS:10.1 | 48 | Chr1: 24363150-24363197 | Arabidopsis thaliana |
AT1G65540:CDS:9.1 | 195 | Chr1: 24363300-24363494 | Arabidopsis thaliana |
AT1G65540:CDS:8.1 | 175 | Chr1: 24363641-24363815 | Arabidopsis thaliana |
AT1G65540:CDS:7.1 | 65 | Chr1: 24363909-24363973 | Arabidopsis thaliana |
AT1G65540:CDS:6.1 | 127 | Chr1: 24364143-24364269 | Arabidopsis thaliana |
AT1G65540:CDS:5.1 | 93 | Chr1: 24364431-24364523 | Arabidopsis thaliana |
AT1G65540:CDS:4.1 | 89 | Chr1: 24364613-24364701 | Arabidopsis thaliana |
AT1G65540:CDS:3.1 | 147 | Chr1: 24364786-24364932 | Arabidopsis thaliana |
AT1G65540:CDS:2.1 | 313 | Chr1: 24365098-24365410 | Arabidopsis thaliana |
AT1G65540:CDS:1.1 | 518 | Chr1: 24365494-24366011 | Arabidopsis thaliana |
AT1G65540:CDS:14.2 | 95 | Chr1: 24362382-24362476 | Arabidopsis thaliana |
AT1G65540:CDS:13.2 | 116 | Chr1: 24362549-24362664 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G65520:exon:1 | 1023 | Chr1: 24361032-24362054 | Arabidopsis thaliana |
AT1G65540:exon:4 | 572 | Chr1: 24365494-24366065 | Arabidopsis thaliana |
AT1G65540:exon:18 | 432 | Chr1: 24362045-24362476 | Arabidopsis thaliana |
AT1G65540:exon:3 | 596 | Chr1: 24365494-24366089 | Arabidopsis thaliana |
AT1G65540:exon:1 | 123 | Chr1: 24366334-24366456 | Arabidopsis thaliana |
AT1G65540:exon:17 | 347 | Chr1: 24362130-24362476 | Arabidopsis thaliana |
AT1G65540:exon:16 | 116 | Chr1: 24362549-24362664 | Arabidopsis thaliana |
AT1G65540:exon:15 | 83 | Chr1: 24362744-24362826 | Arabidopsis thaliana |
AT1G65540:exon:14 | 147 | Chr1: 24362911-24363057 | Arabidopsis thaliana |
AT1G65540:exon:13 | 48 | Chr1: 24363150-24363197 | Arabidopsis thaliana |
AT1G65540:exon:12 | 195 | Chr1: 24363300-24363494 | Arabidopsis thaliana |
AT1G65540:exon:11 | 175 | Chr1: 24363641-24363815 | Arabidopsis thaliana |
AT1G65540:exon:10 | 65 | Chr1: 24363909-24363973 | Arabidopsis thaliana |
AT1G65540:exon:9 | 127 | Chr1: 24364143-24364269 | Arabidopsis thaliana |
AT1G65540:exon:8 | 93 | Chr1: 24364431-24364523 | Arabidopsis thaliana |
AT1G65540:exon:7 | 89 | Chr1: 24364613-24364701 | Arabidopsis thaliana |
AT1G65540:exon:6 | 147 | Chr1: 24364786-24364932 | Arabidopsis thaliana |
AT1G65540:exon:5 | 313 | Chr1: 24365098-24365410 | Arabidopsis thaliana |
AT1G65540:exon:2 | 973 | Chr1: 24365494-24366466 | Arabidopsis thaliana |
AT1G65541:exon:1 | 340 | Chr1: 24366066-24366405 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G65520:five_prime_UTR:1 | 161 | Chr1: 24361894-24362054 | Arabidopsis thaliana |
AT1G65540:five_prime_UTR:4 | 54 | Chr1: 24366012-24366065 | Arabidopsis thaliana |
AT1G65540:five_prime_UTR:3 | 78 | Chr1: 24366012-24366089 | Arabidopsis thaliana |
AT1G65540:five_prime_UTR:1 | 123 | Chr1: 24366334-24366456 | Arabidopsis thaliana |
AT1G65540:five_prime_UTR:2 | 455 | Chr1: 24366012-24366466 | Arabidopsis thaliana |
AT1G65541:five_prime_UTR:1 | 244 | Chr1: 24366066-24366309 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G65520 | locus:2034178 | ECI1 | delta(3), delta(2)-enoyl CoA isomerase 1 | 1023 | Chr1: 24361032-24362054 | A. thaliana | delta(3), delta(2)-enoyl CoA isomerase 1;(source:Araport11) | encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation | delta(3), delta(2)-enoyl CoA isomerase 1 | ATECI1, ECHIC, ECI1, PEC11 |
AT1G65541 | locus:4515102721 | AT1G65541 | 340 | Chr1: 24366066-24366405 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G65520.1 | 1023 | Chr1: 24361032-24362054 |
AT1G65540.2 | 2725 | Chr1: 24362045-24366456 |
AT1G65540.1 | 2749 | Chr1: 24362045-24366456 |
AT1G65540.3 | 2918 | Chr1: 24362130-24366466 |
AT1G65541.1 | 340 | Chr1: 24366066-24366405 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G65540:three_prime_UTR:2 | 337 | Chr1: 24362045-24362381 | Arabidopsis thaliana |
AT1G65540:three_prime_UTR:1 | 252 | Chr1: 24362130-24362381 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4IBH5_ARATH | similarity | Belongs to the LETM1 family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
mitochondrion | ECO |
mitochondrial inner membrane | ECO |
molecular function | |
ribosome binding | ECO |
antiporter activity | ECO |
calcium ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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