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Gene : AT1G65240 A. thaliana

DB identifier  ? AT1G65240 Secondary Identifier  ? locus:2200365
Brief Description  Eukaryotic aspartyl protease family protein
TAIR Computational Description  Eukaryotic aspartyl protease family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Eukaryotic aspartyl protease family protein
TAIR Aliases  A39

1 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2657  
Location: Chr1:24230867-24233523 reverse strand

Gene models - AT1G65240 AT1G65240

? Gene models

Transcripts: 1  Exons: 10  Introns: 9 

Overlapping Features

? Genome features that overlap coordinates of this Gene

11 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ASP39_ARATH developmental stage In flowers, expressed in the pollen and growing pollen tubes (PubMed:27872247). During microspore development, observed expressed from tetrad to tricellular pollen (PubMed:27872247). Also present in young siliques and developing ovules (PubMed:27872247).
ASP39_ARATH function Displays aspartic proteolytic activity (PubMed:27872247). Together with A36, contributes to pollen and ovule development, including the apical cell wall constitution of the growing pollen tubes (PubMed:27872247).
ASP39_ARATH similarity Belongs to the peptidase A1 family.
ASP39_ARATH subcellular location Displays punctate cytosolic localization and colocalizes with the GPI-anchored protein COBL10 at the plasma membrane and in the cytosol (PubMed:27872247). In pollen grains, mainly present at the plasma membrane and in reticular structures in the cytosol (PubMed:27872247). In pollen tubes, exhibits a punctate localization in the cytosol and occurs weakly at the plasma membrane (PubMed:27872247).
ASP39_ARATH tissue specificity Highly expressed in pollen and pollen tubes (PubMed:27872247). Mostly expressed in inflorescence, flowers and siliques, and barely in leaves and seedlings (PubMed:27872247).

1 Proteins

Function

Gene Ontology

cellular component
pollen tube  ? ECO  
cytosol  ? ECO  
plasma membrane  ? ECO  
cytoplasm  ? ECO  
side of membrane  ? ECO  
molecular function
aspartic-type endopeptidase activity  ? ECO  
biological process
pollen tube guidance  ? ECO  
proteolysis  ? ECO  
protein catabolic process  ? ECO  
pollen tube growth  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets