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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G63020:CDS:22 | 195 | Chr1: 23355329-23355523 | Arabidopsis thaliana |
AT1G63020:CDS:21 | 112 | Chr1: 23355592-23355703 | Arabidopsis thaliana |
AT1G63020:CDS:20 | 248 | Chr1: 23355787-23356034 | Arabidopsis thaliana |
AT1G63020:CDS:18 | 138 | Chr1: 23356116-23356253 | Arabidopsis thaliana |
AT1G63020:CDS:17 | 174 | Chr1: 23356340-23356513 | Arabidopsis thaliana |
AT1G63020:CDS:14 | 263 | Chr1: 23356593-23356855 | Arabidopsis thaliana |
AT1G63020:CDS:13 | 149 | Chr1: 23356948-23357096 | Arabidopsis thaliana |
AT1G63020:CDS:12 | 119 | Chr1: 23357192-23357310 | Arabidopsis thaliana |
AT1G63020:CDS:11 | 67 | Chr1: 23357394-23357460 | Arabidopsis thaliana |
AT1G63020:CDS:10 | 170 | Chr1: 23357544-23357713 | Arabidopsis thaliana |
AT1G63020:CDS:9 | 1803 | Chr1: 23357809-23359611 | Arabidopsis thaliana |
AT1G63020:CDS:19 | 35 | Chr1: 23356000-23356034 | Arabidopsis thaliana |
AT1G63020:CDS:15 | 112 | Chr1: 23356402-23356513 | Arabidopsis thaliana |
AT1G63020:CDS:14.1 | 263 | Chr1: 23356593-23356855 | Arabidopsis thaliana |
AT1G63020:CDS:13.1 | 149 | Chr1: 23356948-23357096 | Arabidopsis thaliana |
AT1G63020:CDS:12.1 | 119 | Chr1: 23357192-23357310 | Arabidopsis thaliana |
AT1G63020:CDS:11.1 | 67 | Chr1: 23357394-23357460 | Arabidopsis thaliana |
AT1G63020:CDS:10.1 | 170 | Chr1: 23357544-23357713 | Arabidopsis thaliana |
AT1G63020:CDS:8 | 1893 | Chr1: 23357809-23359701 | Arabidopsis thaliana |
AT1G63020:CDS:7 | 96 | Chr1: 23359782-23359877 | Arabidopsis thaliana |
AT1G63020:CDS:6 | 153 | Chr1: 23359966-23360118 | Arabidopsis thaliana |
AT1G63020:CDS:5 | 219 | Chr1: 23360195-23360413 | Arabidopsis thaliana |
AT1G63020:CDS:4 | 39 | Chr1: 23360501-23360539 | Arabidopsis thaliana |
AT1G63020:CDS:3 | 122 | Chr1: 23360620-23360741 | Arabidopsis thaliana |
AT1G63020:CDS:2 | 121 | Chr1: 23360839-23360959 | Arabidopsis thaliana |
AT1G63020:CDS:1 | 84 | Chr1: 23361043-23361126 | Arabidopsis thaliana |
AT1G63020:CDS:22.1 | 195 | Chr1: 23355329-23355523 | Arabidopsis thaliana |
AT1G63020:CDS:21.1 | 112 | Chr1: 23355592-23355703 | Arabidopsis thaliana |
AT1G63020:CDS:20.1 | 248 | Chr1: 23355787-23356034 | Arabidopsis thaliana |
AT1G63020:CDS:18.1 | 138 | Chr1: 23356116-23356253 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G63020:exon:12 | 1923 | Chr1: 23357809-23359731 | Arabidopsis thaliana |
AT1G63020:exon:19 | 112 | Chr1: 23356402-23356513 | Arabidopsis thaliana |
AT1G63020:exon:4 | 45 | Chr1: 23362148-23362192 | Arabidopsis thaliana |
AT1G63020:exon:1 | 51 | Chr1: 23362437-23362487 | Arabidopsis thaliana |
AT1G63020:exon:26 | 839 | Chr1: 23354685-23355523 | Arabidopsis thaliana |
AT1G63020:exon:20 | 132 | Chr1: 23356382-23356513 | Arabidopsis thaliana |
AT1G63020:exon:2 | 286 | Chr1: 23362304-23362589 | Arabidopsis thaliana |
AT1G63020:exon:25 | 577 | Chr1: 23354947-23355523 | Arabidopsis thaliana |
AT1G63020:exon:24 | 112 | Chr1: 23355592-23355703 | Arabidopsis thaliana |
AT1G63020:exon:23 | 248 | Chr1: 23355787-23356034 | Arabidopsis thaliana |
AT1G63020:exon:22 | 138 | Chr1: 23356116-23356253 | Arabidopsis thaliana |
AT1G63020:exon:21 | 174 | Chr1: 23356340-23356513 | Arabidopsis thaliana |
AT1G63020:exon:18 | 263 | Chr1: 23356593-23356855 | Arabidopsis thaliana |
AT1G63020:exon:17 | 149 | Chr1: 23356948-23357096 | Arabidopsis thaliana |
AT1G63020:exon:16 | 119 | Chr1: 23357192-23357310 | Arabidopsis thaliana |
AT1G63020:exon:15 | 67 | Chr1: 23357394-23357460 | Arabidopsis thaliana |
AT1G63020:exon:14 | 170 | Chr1: 23357544-23357713 | Arabidopsis thaliana |
AT1G63020:exon:13 | 1893 | Chr1: 23357809-23359701 | Arabidopsis thaliana |
AT1G63020:exon:11 | 96 | Chr1: 23359782-23359877 | Arabidopsis thaliana |
AT1G63020:exon:10 | 153 | Chr1: 23359966-23360118 | Arabidopsis thaliana |
AT1G63020:exon:9 | 219 | Chr1: 23360195-23360413 | Arabidopsis thaliana |
AT1G63020:exon:8 | 39 | Chr1: 23360501-23360539 | Arabidopsis thaliana |
AT1G63020:exon:7 | 122 | Chr1: 23360620-23360741 | Arabidopsis thaliana |
AT1G63020:exon:6 | 121 | Chr1: 23360839-23360959 | Arabidopsis thaliana |
AT1G63020:exon:5 | 97 | Chr1: 23361043-23361139 | Arabidopsis thaliana |
AT1G63020:exon:3 | 261 | Chr1: 23362304-23362564 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G63020:five_prime_UTR:6 | 120 | Chr1: 23359612-23359731 | Arabidopsis thaliana |
AT1G63020:five_prime_UTR:4 | 45 | Chr1: 23362148-23362192 | Arabidopsis thaliana |
AT1G63020:five_prime_UTR:1 | 51 | Chr1: 23362437-23362487 | Arabidopsis thaliana |
AT1G63020:five_prime_UTR:2 | 286 | Chr1: 23362304-23362589 | Arabidopsis thaliana |
AT1G63020:five_prime_UTR:5 | 13 | Chr1: 23361127-23361139 | Arabidopsis thaliana |
AT1G63020:five_prime_UTR:3 | 261 | Chr1: 23362304-23362564 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G63020.5 | 4202 | Chr1: 23354685-23359731 |
AT1G63020.4 | 4915 | Chr1: 23354685-23362487 |
AT1G63020.2 | 5115 | Chr1: 23354685-23362487 |
AT1G63020.3 | 5263 | Chr1: 23354685-23362589 |
AT1G63020.1 | 5018 | Chr1: 23354947-23362564 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G63020:three_prime_UTR:4 | 839 | Chr1: 23354685-23355523 | Arabidopsis thaliana |
AT1G63020:three_prime_UTR:2 | 112 | Chr1: 23355592-23355703 | Arabidopsis thaliana |
AT1G63020:three_prime_UTR:1 | 213 | Chr1: 23355787-23355999 | Arabidopsis thaliana |
AT1G63020:three_prime_UTR:5 | 644 | Chr1: 23354685-23355328 | Arabidopsis thaliana |
AT1G63020:three_prime_UTR:3 | 382 | Chr1: 23354947-23355328 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
NRPD1_ARATH | function | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity). Largest and catalytic component of RNA polymerase IV which mediates 24-nt short-interfering RNAs (siRNA) accumulation. Implicated in siRNA-directed heterochromatin formation through the action of DCL3 and AGO4, and subsequent DNA methylation-dependent silencing of targeted sequences. Essential component of a self-reinforcing loop coupling de novo DNA methylation to siRNA production. Required for intercellular but not intracellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing. Involved in the maintenance of post-transcriptional RNA silencing. |
NRPD1_ARATH | similarity | Belongs to the RNA polymerase beta' chain family. |
NRPD1_ARATH | subcellular location | Follows a punctate localization pattern. |
NRPD1_ARATH | tissue specificity | Mostly expressed in flowers, and, to a lower extent, in leaves. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
nucleoplasm | ECO |
RNA polymerase IV complex | ECO |
molecular function | |
DNA-directed 5'-3' RNA polymerase activity | ECO |
DNA binding | ECO |
metal ion binding | ECO |
biological process | |
siRNA-mediated long-distance post-transcriptional gene silencing | ECO |
siRNA processing | ECO |
regulatory ncRNA-mediated gene silencing | ECO |
DNA-templated transcription | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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