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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 21, Exons: 13, Five Prime UTRs: 2, Genes: 2, mRNAs: 4, Three Prime UTRs: 5
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G62840:CDS:2 | 615 | Chr1: 23271793-23272407 | Arabidopsis thaliana |
AT1G62850:CDS:8 | 94 | Chr1: 23272608-23272701 | Arabidopsis thaliana |
AT1G62850:CDS:6 | 71 | Chr1: 23272793-23272863 | Arabidopsis thaliana |
AT1G62850:CDS:5 | 34 | Chr1: 23272954-23272987 | Arabidopsis thaliana |
AT1G62850:CDS:4 | 65 | Chr1: 23273066-23273130 | Arabidopsis thaliana |
AT1G62850:CDS:3 | 83 | Chr1: 23273341-23273423 | Arabidopsis thaliana |
AT1G62850:CDS:2 | 60 | Chr1: 23273505-23273564 | Arabidopsis thaliana |
AT1G62850:CDS:1 | 304 | Chr1: 23273908-23274211 | Arabidopsis thaliana |
AT1G62850:CDS:8.1 | 94 | Chr1: 23272608-23272701 | Arabidopsis thaliana |
AT1G62850:CDS:6.1 | 71 | Chr1: 23272793-23272863 | Arabidopsis thaliana |
AT1G62850:CDS:5.1 | 34 | Chr1: 23272954-23272987 | Arabidopsis thaliana |
AT1G62850:CDS:4.1 | 65 | Chr1: 23273066-23273130 | Arabidopsis thaliana |
AT1G62850:CDS:3.1 | 83 | Chr1: 23273341-23273423 | Arabidopsis thaliana |
AT1G62850:CDS:2.1 | 60 | Chr1: 23273505-23273564 | Arabidopsis thaliana |
AT1G62850:CDS:1.1 | 304 | Chr1: 23273908-23274211 | Arabidopsis thaliana |
AT1G62850:CDS:7 | 75 | Chr1: 23272789-23272863 | Arabidopsis thaliana |
AT1G62850:CDS:5.2 | 34 | Chr1: 23272954-23272987 | Arabidopsis thaliana |
AT1G62850:CDS:4.2 | 65 | Chr1: 23273066-23273130 | Arabidopsis thaliana |
AT1G62850:CDS:3.2 | 83 | Chr1: 23273341-23273423 | Arabidopsis thaliana |
AT1G62850:CDS:2.2 | 60 | Chr1: 23273505-23273564 | Arabidopsis thaliana |
AT1G62850:CDS:1.2 | 304 | Chr1: 23273908-23274211 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G62840:exon:2 | 786 | Chr1: 23271793-23272578 | Arabidopsis thaliana |
AT1G08577:exon:1 | 246 | Chr1: 23271551-23271796 | Arabidopsis thaliana |
AT1G62850:exon:11 | 999 | Chr1: 23271703-23272701 | Arabidopsis thaliana |
AT1G62850:exon:1 | 433 | Chr1: 23273908-23274340 | Arabidopsis thaliana |
AT1G62850:exon:10 | 569 | Chr1: 23271750-23272318 | Arabidopsis thaliana |
AT1G62850:exon:9 | 120 | Chr1: 23272582-23272701 | Arabidopsis thaliana |
AT1G62850:exon:7 | 71 | Chr1: 23272793-23272863 | Arabidopsis thaliana |
AT1G62850:exon:8 | 97 | Chr1: 23272767-23272863 | Arabidopsis thaliana |
AT1G62850:exon:6 | 34 | Chr1: 23272954-23272987 | Arabidopsis thaliana |
AT1G62850:exon:5 | 65 | Chr1: 23273066-23273130 | Arabidopsis thaliana |
AT1G62850:exon:4 | 83 | Chr1: 23273341-23273423 | Arabidopsis thaliana |
AT1G62850:exon:3 | 60 | Chr1: 23273505-23273564 | Arabidopsis thaliana |
AT1G62850:exon:2 | 395 | Chr1: 23273908-23274302 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G62850:five_prime_UTR:1 | 129 | Chr1: 23274212-23274340 | Arabidopsis thaliana |
AT1G62850:five_prime_UTR:2 | 91 | Chr1: 23274212-23274302 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G62840 | locus:2026202 | AT1G62840 | 1163 | Chr1: 23271416-23272578 | A. thaliana | ankyrin repeat/KH domain protein (DUF1442);(source:Araport11) | NULL | Protein of unknown function (DUF1442) | ||
AT1G08577 | AT1G08577 | 246 | Chr1: 23271551-23271796 | A. thaliana | Natural antisense transcript overlaps with AT1G62840;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G62840.1 | 911 | Chr1: 23271416-23272578 |
AT1G62850.2 | 1745 | Chr1: 23271703-23274340 |
AT1G62850.3 | 1397 | Chr1: 23271750-23274302 |
AT1G62850.4 | 734 | Chr1: 23272767-23274302 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G62840:three_prime_UTR:1 | 171 | Chr1: 23272408-23272578 | Arabidopsis thaliana |
AT1G62850:three_prime_UTR:4 | 905 | Chr1: 23271703-23272607 | Arabidopsis thaliana |
AT1G62850:three_prime_UTR:3 | 569 | Chr1: 23271750-23272318 | Arabidopsis thaliana |
AT1G62850:three_prime_UTR:2 | 26 | Chr1: 23272582-23272607 | Arabidopsis thaliana |
AT1G62850:three_prime_UTR:1 | 22 | Chr1: 23272767-23272788 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
translation release factor activity | ECO |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...