External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 45, Exons: 23, Five Prime UTRs: 5, mRNAs: 3, Three Prime UTRs: 3, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G60860:CDS:21 | 115 | Chr1: 22401244-22401358 | Arabidopsis thaliana |
AT1G60860:CDS:20 | 446 | Chr1: 22401436-22401881 | Arabidopsis thaliana |
AT1G60860:CDS:19 | 91 | Chr1: 22402020-22402110 | Arabidopsis thaliana |
AT1G60860:CDS:18 | 125 | Chr1: 22402305-22402429 | Arabidopsis thaliana |
AT1G60860:CDS:17 | 261 | Chr1: 22402652-22402912 | Arabidopsis thaliana |
AT1G60860:CDS:16 | 87 | Chr1: 22402997-22403083 | Arabidopsis thaliana |
AT1G60860:CDS:15 | 210 | Chr1: 22403167-22403376 | Arabidopsis thaliana |
AT1G60860:CDS:14 | 126 | Chr1: 22403637-22403762 | Arabidopsis thaliana |
AT1G60860:CDS:13 | 213 | Chr1: 22404208-22404420 | Arabidopsis thaliana |
AT1G60860:CDS:12 | 42 | Chr1: 22404766-22404807 | Arabidopsis thaliana |
AT1G60860:CDS:11 | 96 | Chr1: 22404916-22405011 | Arabidopsis thaliana |
AT1G60860:CDS:9 | 48 | Chr1: 22405103-22405150 | Arabidopsis thaliana |
AT1G60860:CDS:8 | 66 | Chr1: 22405290-22405355 | Arabidopsis thaliana |
AT1G60860:CDS:7 | 45 | Chr1: 22405714-22405758 | Arabidopsis thaliana |
AT1G60860:CDS:5 | 63 | Chr1: 22406105-22406167 | Arabidopsis thaliana |
AT1G60860:CDS:4 | 71 | Chr1: 22406383-22406453 | Arabidopsis thaliana |
AT1G60860:CDS:3 | 101 | Chr1: 22407018-22407118 | Arabidopsis thaliana |
AT1G60860:CDS:2 | 77 | Chr1: 22407428-22407504 | Arabidopsis thaliana |
AT1G60860:CDS:1 | 48 | Chr1: 22407592-22407639 | Arabidopsis thaliana |
AT1G60860:CDS:21.1 | 115 | Chr1: 22401244-22401358 | Arabidopsis thaliana |
AT1G60860:CDS:20.1 | 446 | Chr1: 22401436-22401881 | Arabidopsis thaliana |
AT1G60860:CDS:19.1 | 91 | Chr1: 22402020-22402110 | Arabidopsis thaliana |
AT1G60860:CDS:18.1 | 125 | Chr1: 22402305-22402429 | Arabidopsis thaliana |
AT1G60860:CDS:17.1 | 261 | Chr1: 22402652-22402912 | Arabidopsis thaliana |
AT1G60860:CDS:16.1 | 87 | Chr1: 22402997-22403083 | Arabidopsis thaliana |
AT1G60860:CDS:15.1 | 210 | Chr1: 22403167-22403376 | Arabidopsis thaliana |
AT1G60860:CDS:14.1 | 126 | Chr1: 22403637-22403762 | Arabidopsis thaliana |
AT1G60860:CDS:13.1 | 213 | Chr1: 22404208-22404420 | Arabidopsis thaliana |
AT1G60860:CDS:12.1 | 42 | Chr1: 22404766-22404807 | Arabidopsis thaliana |
AT1G60860:CDS:11.1 | 96 | Chr1: 22404916-22405011 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G60860:exon:23 | 502 | Chr1: 22400857-22401358 | Arabidopsis thaliana |
AT1G60860:exon:4 | 101 | Chr1: 22407018-22407118 | Arabidopsis thaliana |
AT1G60860:exon:2 | 77 | Chr1: 22407428-22407504 | Arabidopsis thaliana |
AT1G60860:exon:1 | 233 | Chr1: 22407592-22407824 | Arabidopsis thaliana |
AT1G60860:exon:22 | 458 | Chr1: 22400901-22401358 | Arabidopsis thaliana |
AT1G60860:exon:11 | 96 | Chr1: 22404916-22405011 | Arabidopsis thaliana |
AT1G60860:exon:9 | 48 | Chr1: 22405103-22405150 | Arabidopsis thaliana |
AT1G60860:exon:8 | 66 | Chr1: 22405290-22405355 | Arabidopsis thaliana |
AT1G60860:exon:7 | 45 | Chr1: 22405714-22405758 | Arabidopsis thaliana |
AT1G60860:exon:6 | 63 | Chr1: 22406105-22406167 | Arabidopsis thaliana |
AT1G60860:exon:5 | 71 | Chr1: 22406383-22406453 | Arabidopsis thaliana |
AT1G60860:exon:3 | 289 | Chr1: 22407018-22407306 | Arabidopsis thaliana |
AT1G60860:exon:21 | 432 | Chr1: 22400927-22401358 | Arabidopsis thaliana |
AT1G60860:exon:20 | 446 | Chr1: 22401436-22401881 | Arabidopsis thaliana |
AT1G60860:exon:19 | 91 | Chr1: 22402020-22402110 | Arabidopsis thaliana |
AT1G60860:exon:18 | 125 | Chr1: 22402305-22402429 | Arabidopsis thaliana |
AT1G60860:exon:17 | 261 | Chr1: 22402652-22402912 | Arabidopsis thaliana |
AT1G60860:exon:16 | 87 | Chr1: 22402997-22403083 | Arabidopsis thaliana |
AT1G60860:exon:15 | 210 | Chr1: 22403167-22403376 | Arabidopsis thaliana |
AT1G60860:exon:14 | 126 | Chr1: 22403637-22403762 | Arabidopsis thaliana |
AT1G60860:exon:13 | 213 | Chr1: 22404208-22404420 | Arabidopsis thaliana |
AT1G60860:exon:12 | 42 | Chr1: 22404766-22404807 | Arabidopsis thaliana |
AT1G60860:exon:10 | 353 | Chr1: 22404916-22405268 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G60860:five_prime_UTR:1 | 185 | Chr1: 22407640-22407824 | Arabidopsis thaliana |
AT1G60860:five_prime_UTR:4 | 36 | Chr1: 22406132-22406167 | Arabidopsis thaliana |
AT1G60860:five_prime_UTR:3 | 71 | Chr1: 22406383-22406453 | Arabidopsis thaliana |
AT1G60860:five_prime_UTR:2 | 289 | Chr1: 22407018-22407306 | Arabidopsis thaliana |
AT1G60860:five_prime_UTR:5 | 251 | Chr1: 22405018-22405268 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G60860.1 | 2903 | Chr1: 22400857-22407824 |
AT1G60860.2 | 2737 | Chr1: 22400901-22407306 |
AT1G60860.3 | 2386 | Chr1: 22400927-22405268 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G60860:three_prime_UTR:3 | 387 | Chr1: 22400857-22401243 | Arabidopsis thaliana |
AT1G60860:three_prime_UTR:2 | 343 | Chr1: 22400901-22401243 | Arabidopsis thaliana |
AT1G60860:three_prime_UTR:1 | 317 | Chr1: 22400927-22401243 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE73940 | 231 | Chr1: 22400915-22401145 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE73940:transposon_fragment:1 | 231 | Chr1: 22400915-22401145 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8ATB6_ARATH A0A1P8ATE8_ARATH | function | GTPase-activating protein for the ADP ribosylation factor family. |
AGD2_ARATH | function | Probable GTPase-activating protein. |
AGD2_ARATH | tissue specificity | Expressed in roots, hypocotyls, cotyledons, leaf and shoot apical meristems and siliques. |
Function
Gene Ontology
cellular component | |
---|---|
cytoplasm | ECO |
molecular function | |
GTPase activator activity | ECO |
metal ion binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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