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Gene : AT1G59970 A. thaliana

DB identifier  ? AT1G59970 Secondary Identifier  ? locus:2025891
Brief Description  Matrixin family protein
TAIR Computational Description  Matrixin family protein;(source:Araport11)
TAIR Curator Summary  Matrix metalloproteinase important for root development and root bacterial communities. Modulates auxin/ABA signaling rendering the plant sensitive to drought stress and recruiting differential root bacterial communities.
TAIR Short Description  Matrixin family protein
TAIR Aliases  AT5-MMP

0 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1580  
Location: Chr1:22073352-22074931

Gene models - AT1G59970 AT1G59970

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
5MMP_ARATH function Matrix metalloproteinases (MMPs) or matrixins may play a role in the degradation and remodeling of the extracellular matrix (ECM) during development or in response to stresses (By similarity). Active on Mca-KESAbuNLFVLKDpaR-NH(2) (QF75) and, to some extent, on McaPLGLDpaAR-NH(2) (QF24), myelin basic protein (MBP) and beta-casein (PubMed:24156403).
5MMP_ARATH similarity Belongs to the peptidase M10A family. Matrix metalloproteinases (MMPs) subfamily.
5MMP_ARATH tissue specificity Mostly expressed in leaves, roots and stems, and, to a lower extent, in flowers.

1 Proteins

Function

Gene Ontology

cellular component
extracellular matrix  ? ECO  
plasma membrane  ? ECO  
side of membrane  ? ECO  
molecular function
zinc ion binding  ? ECO  
metalloendopeptidase activity  ? ECO  
biological process
proteolysis  ? ECO  
defense response to fungus  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets