External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNA: 1, CDSs: 27, Exons: 17, Five Prime UTRs: 2, Genes: 2, mRNAs: 4, Three Prime UTRs: 3
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59840:CDS:1 | 120 | Chr1: 22026569-22026688 | Arabidopsis thaliana |
AT1G59840:CDS:2 | 173 | Chr1: 22026778-22026950 | Arabidopsis thaliana |
AT1G59840:CDS:3 | 100 | Chr1: 22027147-22027246 | Arabidopsis thaliana |
AT1G59840:CDS:4 | 74 | Chr1: 22027332-22027405 | Arabidopsis thaliana |
AT1G59840:CDS:5 | 182 | Chr1: 22027495-22027676 | Arabidopsis thaliana |
AT1G59840:CDS:6 | 71 | Chr1: 22027759-22027829 | Arabidopsis thaliana |
AT1G59840:CDS:8 | 84 | Chr1: 22027912-22027995 | Arabidopsis thaliana |
AT1G59840:CDS:9 | 90 | Chr1: 22028085-22028174 | Arabidopsis thaliana |
AT1G59840:CDS:1.1 | 120 | Chr1: 22026569-22026688 | Arabidopsis thaliana |
AT1G59840:CDS:2.1 | 173 | Chr1: 22026778-22026950 | Arabidopsis thaliana |
AT1G59840:CDS:3.1 | 100 | Chr1: 22027147-22027246 | Arabidopsis thaliana |
AT1G59840:CDS:4.1 | 74 | Chr1: 22027332-22027405 | Arabidopsis thaliana |
AT1G59840:CDS:5.1 | 182 | Chr1: 22027495-22027676 | Arabidopsis thaliana |
AT1G59840:CDS:6.1 | 71 | Chr1: 22027759-22027829 | Arabidopsis thaliana |
AT1G59840:CDS:8.1 | 84 | Chr1: 22027912-22027995 | Arabidopsis thaliana |
AT1G59840:CDS:9.1 | 90 | Chr1: 22028085-22028174 | Arabidopsis thaliana |
AT1G59840:CDS:1.2 | 120 | Chr1: 22026569-22026688 | Arabidopsis thaliana |
AT1G59840:CDS:2.2 | 173 | Chr1: 22026778-22026950 | Arabidopsis thaliana |
AT1G59840:CDS:3.2 | 100 | Chr1: 22027147-22027246 | Arabidopsis thaliana |
AT1G59840:CDS:4.2 | 74 | Chr1: 22027332-22027405 | Arabidopsis thaliana |
AT1G59840:CDS:5.2 | 182 | Chr1: 22027495-22027676 | Arabidopsis thaliana |
AT1G59840:CDS:7 | 29 | Chr1: 22027801-22027829 | Arabidopsis thaliana |
AT1G59840:CDS:8.2 | 84 | Chr1: 22027912-22027995 | Arabidopsis thaliana |
AT1G59840:CDS:9.2 | 90 | Chr1: 22028085-22028174 | Arabidopsis thaliana |
AT1G59850:CDS:3 | 156 | Chr1: 22028509-22028664 | Arabidopsis thaliana |
AT1G59850:CDS:2 | 510 | Chr1: 22028768-22029277 | Arabidopsis thaliana |
AT1G59850:CDS:1 | 831 | Chr1: 22029377-22030207 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59840:exon:12 | 335 | Chr1: 22028085-22028419 | Arabidopsis thaliana |
AT1G59840:exon:1 | 227 | Chr1: 22026462-22026688 | Arabidopsis thaliana |
AT1G59840:exon:7 | 71 | Chr1: 22027759-22027829 | Arabidopsis thaliana |
AT1G59840:exon:11 | 167 | Chr1: 22028085-22028251 | Arabidopsis thaliana |
AT1G59840:exon:13 | 893 | Chr1: 22028487-22029379 | Arabidopsis thaliana |
AT1G59840:exon:2 | 180 | Chr1: 22026509-22026688 | Arabidopsis thaliana |
AT1G59840:exon:3 | 173 | Chr1: 22026778-22026950 | Arabidopsis thaliana |
AT1G59840:exon:4 | 100 | Chr1: 22027147-22027246 | Arabidopsis thaliana |
AT1G59840:exon:5 | 74 | Chr1: 22027332-22027405 | Arabidopsis thaliana |
AT1G59840:exon:6 | 182 | Chr1: 22027495-22027676 | Arabidopsis thaliana |
AT1G59840:exon:8 | 29 | Chr1: 22027801-22027829 | Arabidopsis thaliana |
AT1G59840:exon:9 | 84 | Chr1: 22027912-22027995 | Arabidopsis thaliana |
AT1G59840:exon:10 | 90 | Chr1: 22028085-22028174 | Arabidopsis thaliana |
AT1G08267:exon:1 | 242 | Chr1: 22026927-22027168 | Arabidopsis thaliana |
AT1G59850:exon:3 | 156 | Chr1: 22028509-22028664 | Arabidopsis thaliana |
AT1G59850:exon:2 | 510 | Chr1: 22028768-22029277 | Arabidopsis thaliana |
AT1G59850:exon:1 | 885 | Chr1: 22029377-22030261 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59840:five_prime_UTR:1 | 107 | Chr1: 22026462-22026568 | Arabidopsis thaliana |
AT1G59840:five_prime_UTR:2 | 60 | Chr1: 22026509-22026568 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G08267 | AT1G08267 | 242 | Chr1: 22026927-22027168 | A. thaliana | Natural antisense transcript overlaps with AT1G59840;(source:Araport11) | NULL | ||||
AT1G59850 | locus:2025906 | AT1G59850 | 1753 | Chr1: 22028509-22030261 | A. thaliana | ARM repeat superfamily protein;(source:Araport11) | NULL | ARM repeat superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G59840.1 | 1246 | Chr1: 22026462-22028419 |
AT1G59840.2 | 1971 | Chr1: 22026462-22029379 |
AT1G59840.3 | 912 | Chr1: 22026509-22028174 |
AT1G59850.1 | 1551 | Chr1: 22028509-22030261 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59840:three_prime_UTR:2 | 245 | Chr1: 22028175-22028419 | Arabidopsis thaliana |
AT1G59840:three_prime_UTR:1 | 77 | Chr1: 22028175-22028251 | Arabidopsis thaliana |
AT1G59840:three_prime_UTR:3 | 893 | Chr1: 22028487-22029379 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CCB4_ARATH | function | Required for the biogenesis and accumulation of native cytochrome b6 in the thylakoid membrane. Controls the conversion of apocytochrome b6 to holocytochrome b6. Required for covalent binding of the c-type heme to cytochrome b6. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast thylakoid membrane | ECO |
chloroplast | ECO |
molecular function | |
No terms in this category. | |
biological process | |
cytochrome b6f complex assembly | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...