Lists
This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59560:CDS:1 | 74 | Chr1: 21881741-21881814 | Arabidopsis thaliana |
AT1G59560:CDS:2 | 44 | Chr1: 21881907-21881950 | Arabidopsis thaliana |
AT1G59560:CDS:3 | 125 | Chr1: 21882034-21882158 | Arabidopsis thaliana |
AT1G59560:CDS:4 | 96 | Chr1: 21882239-21882334 | Arabidopsis thaliana |
AT1G59560:CDS:5 | 141 | Chr1: 21882411-21882551 | Arabidopsis thaliana |
AT1G59560:CDS:6 | 66 | Chr1: 21882640-21882705 | Arabidopsis thaliana |
AT1G59560:CDS:7 | 113 | Chr1: 21882781-21882893 | Arabidopsis thaliana |
AT1G59560:CDS:8 | 132 | Chr1: 21882980-21883111 | Arabidopsis thaliana |
AT1G59560:CDS:10 | 44 | Chr1: 21883198-21883241 | Arabidopsis thaliana |
AT1G59560:CDS:12 | 79 | Chr1: 21883349-21883427 | Arabidopsis thaliana |
AT1G59560:CDS:14 | 103 | Chr1: 21883530-21883632 | Arabidopsis thaliana |
AT1G59560:CDS:1.1 | 74 | Chr1: 21881741-21881814 | Arabidopsis thaliana |
AT1G59560:CDS:2.1 | 44 | Chr1: 21881907-21881950 | Arabidopsis thaliana |
AT1G59560:CDS:3.1 | 125 | Chr1: 21882034-21882158 | Arabidopsis thaliana |
AT1G59560:CDS:4.1 | 96 | Chr1: 21882239-21882334 | Arabidopsis thaliana |
AT1G59560:CDS:5.1 | 141 | Chr1: 21882411-21882551 | Arabidopsis thaliana |
AT1G59560:CDS:6.1 | 66 | Chr1: 21882640-21882705 | Arabidopsis thaliana |
AT1G59560:CDS:7.1 | 113 | Chr1: 21882781-21882893 | Arabidopsis thaliana |
AT1G59560:CDS:8.1 | 132 | Chr1: 21882980-21883111 | Arabidopsis thaliana |
AT1G59560:CDS:11 | 97 | Chr1: 21883198-21883294 | Arabidopsis thaliana |
AT1G59560:CDS:1.2 | 74 | Chr1: 21881741-21881814 | Arabidopsis thaliana |
AT1G59560:CDS:2.2 | 44 | Chr1: 21881907-21881950 | Arabidopsis thaliana |
AT1G59560:CDS:3.2 | 125 | Chr1: 21882034-21882158 | Arabidopsis thaliana |
AT1G59560:CDS:4.2 | 96 | Chr1: 21882239-21882334 | Arabidopsis thaliana |
AT1G59560:CDS:5.2 | 141 | Chr1: 21882411-21882551 | Arabidopsis thaliana |
AT1G59560:CDS:6.2 | 66 | Chr1: 21882640-21882705 | Arabidopsis thaliana |
AT1G59560:CDS:7.2 | 113 | Chr1: 21882781-21882893 | Arabidopsis thaliana |
AT1G59560:CDS:8.2 | 132 | Chr1: 21882980-21883111 | Arabidopsis thaliana |
AT1G59560:CDS:10.1 | 44 | Chr1: 21883198-21883241 | Arabidopsis thaliana |
AT1G59560:CDS:13 | 83 | Chr1: 21883349-21883431 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59560:exon:14 | 79 | Chr1: 21883349-21883427 | Arabidopsis thaliana |
AT1G59560:exon:1 | 281 | Chr1: 21881534-21881814 | Arabidopsis thaliana |
AT1G59560:exon:13 | 230 | Chr1: 21883198-21883427 | Arabidopsis thaliana |
AT1G59560:exon:16 | 263 | Chr1: 21883530-21883792 | Arabidopsis thaliana |
AT1G59560:exon:2 | 239 | Chr1: 21881576-21881814 | Arabidopsis thaliana |
AT1G59560:exon:10 | 132 | Chr1: 21882980-21883111 | Arabidopsis thaliana |
AT1G59560:exon:12 | 44 | Chr1: 21883198-21883241 | Arabidopsis thaliana |
AT1G59560:exon:15 | 458 | Chr1: 21883349-21883806 | Arabidopsis thaliana |
AT1G59560:exon:3 | 216 | Chr1: 21881599-21881814 | Arabidopsis thaliana |
AT1G59560:exon:4 | 44 | Chr1: 21881907-21881950 | Arabidopsis thaliana |
AT1G59560:exon:5 | 125 | Chr1: 21882034-21882158 | Arabidopsis thaliana |
AT1G59560:exon:6 | 96 | Chr1: 21882239-21882334 | Arabidopsis thaliana |
AT1G59560:exon:7 | 141 | Chr1: 21882411-21882551 | Arabidopsis thaliana |
AT1G59560:exon:8 | 66 | Chr1: 21882640-21882705 | Arabidopsis thaliana |
AT1G59560:exon:9 | 113 | Chr1: 21882781-21882893 | Arabidopsis thaliana |
AT1G59560:exon:11 | 168 | Chr1: 21882980-21883147 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59560:five_prime_UTR:1 | 207 | Chr1: 21881534-21881740 | Arabidopsis thaliana |
AT1G59560:five_prime_UTR:2 | 165 | Chr1: 21881576-21881740 | Arabidopsis thaliana |
AT1G59560:five_prime_UTR:3 | 142 | Chr1: 21881599-21881740 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G59560.1 | 1384 | Chr1: 21881534-21883792 |
AT1G59560.2 | 1491 | Chr1: 21881534-21883792 |
AT1G59560.3 | 1458 | Chr1: 21881576-21883806 |
AT1G59560.4 | 969 | Chr1: 21881599-21883147 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G59560:three_prime_UTR:5 | 160 | Chr1: 21883633-21883792 | Arabidopsis thaliana |
AT1G59560:three_prime_UTR:2 | 133 | Chr1: 21883295-21883427 | Arabidopsis thaliana |
AT1G59560:three_prime_UTR:4 | 263 | Chr1: 21883530-21883792 | Arabidopsis thaliana |
AT1G59560:three_prime_UTR:3 | 375 | Chr1: 21883432-21883806 | Arabidopsis thaliana |
AT1G59560:three_prime_UTR:1 | 20 | Chr1: 21883128-21883147 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SPL1P_ARATH | function | Possesses E3 ubiquitin-protein ligase activity. |
SPL1P_ARATH | pathway | Protein modification; protein ubiquitination. |
Function
Gene Ontology
cellular component | |
---|---|
chloroplast envelope | ECO |
chloroplast outer membrane | ECO |
chloroplast | ECO |
molecular function | |
ubiquitin-protein transferase activity | ECO |
metal ion binding | ECO |
biological process | |
protein ubiquitination | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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