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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56700:CDS:1 | 264 | Chr1: 21256743-21257006 | Arabidopsis thaliana |
AT1G56700:CDS:3 | 105 | Chr1: 21257092-21257196 | Arabidopsis thaliana |
AT1G56700:CDS:4 | 48 | Chr1: 21257273-21257320 | Arabidopsis thaliana |
AT1G56700:CDS:5 | 243 | Chr1: 21257398-21257640 | Arabidopsis thaliana |
AT1G56700:CDS:2 | 177 | Chr1: 21256830-21257006 | Arabidopsis thaliana |
AT1G56700:CDS:3.1 | 105 | Chr1: 21257092-21257196 | Arabidopsis thaliana |
AT1G56700:CDS:4.1 | 48 | Chr1: 21257273-21257320 | Arabidopsis thaliana |
AT1G56700:CDS:5.1 | 243 | Chr1: 21257398-21257640 | Arabidopsis thaliana |
AT1G56700:CDS:1.1 | 264 | Chr1: 21256743-21257006 | Arabidopsis thaliana |
AT1G56700:CDS:3.2 | 105 | Chr1: 21257092-21257196 | Arabidopsis thaliana |
AT1G56700:CDS:4.2 | 48 | Chr1: 21257273-21257320 | Arabidopsis thaliana |
AT1G56700:CDS:5.2 | 243 | Chr1: 21257398-21257640 | Arabidopsis thaliana |
AT1G56700:CDS:1.2 | 264 | Chr1: 21256743-21257006 | Arabidopsis thaliana |
AT1G56700:CDS:3.3 | 105 | Chr1: 21257092-21257196 | Arabidopsis thaliana |
AT1G56700:CDS:4.3 | 48 | Chr1: 21257273-21257320 | Arabidopsis thaliana |
AT1G56700:CDS:5.3 | 243 | Chr1: 21257398-21257640 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56690:exon:1 | 2363 | Chr1: 21253686-21256048 | Arabidopsis thaliana |
AT1G56700:exon:1 | 371 | Chr1: 21256025-21256395 | Arabidopsis thaliana |
AT1G56700:exon:2 | 220 | Chr1: 21256176-21256395 | Arabidopsis thaliana |
AT1G56700:exon:6 | 221 | Chr1: 21256786-21257006 | Arabidopsis thaliana |
AT1G56700:exon:3 | 32 | Chr1: 21256340-21256371 | Arabidopsis thaliana |
AT1G56700:exon:4 | 44 | Chr1: 21256410-21256453 | Arabidopsis thaliana |
AT1G56700:exon:5 | 272 | Chr1: 21256735-21257006 | Arabidopsis thaliana |
AT1G56700:exon:7 | 105 | Chr1: 21257092-21257196 | Arabidopsis thaliana |
AT1G56700:exon:8 | 48 | Chr1: 21257273-21257320 | Arabidopsis thaliana |
AT1G56700:exon:9 | 576 | Chr1: 21257398-21257973 | Arabidopsis thaliana |
AT1G56710:exon:5 | 950 | Chr1: 21257728-21258677 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56700:five_prime_UTR:1 | 371 | Chr1: 21256025-21256395 | Arabidopsis thaliana |
AT1G56700:five_prime_UTR:2 | 220 | Chr1: 21256176-21256395 | Arabidopsis thaliana |
AT1G56700:five_prime_UTR:6 | 44 | Chr1: 21256786-21256829 | Arabidopsis thaliana |
AT1G56700:five_prime_UTR:3 | 32 | Chr1: 21256340-21256371 | Arabidopsis thaliana |
AT1G56700:five_prime_UTR:4 | 44 | Chr1: 21256410-21256453 | Arabidopsis thaliana |
AT1G56700:five_prime_UTR:5 | 8 | Chr1: 21256735-21256742 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G56690 | locus:2027554 | AT1G56690 | 2363 | Chr1: 21253686-21256048 | A. thaliana | Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) | NULL | Pentatricopeptide repeat (PPR) superfamily protein | ||
AT1G56710 | locus:2027534 | AT1G56710 | 2247 | Chr1: 21257728-21259974 | A. thaliana | Pectin lyase-like superfamily protein;(source:Araport11) | NULL | Pectin lyase-like superfamily protein | PGL1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G56690.1 | 2363 | Chr1: 21253686-21256048 |
AT1G56700.1 | 1372 | Chr1: 21256025-21257973 |
AT1G56700.3 | 1170 | Chr1: 21256176-21257973 |
AT1G56700.2 | 1033 | Chr1: 21256340-21257973 |
AT1G56700.4 | 1045 | Chr1: 21256410-21257973 |
AT1G56710.1 | 1835 | Chr1: 21257728-21259974 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56690:three_prime_UTR:1 | 117 | Chr1: 21255932-21256048 | Arabidopsis thaliana |
AT1G56700:three_prime_UTR:1 | 333 | Chr1: 21257641-21257973 | Arabidopsis thaliana |
AT1G56710:three_prime_UTR:1 | 478 | Chr1: 21257728-21258205 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A8MSE7_ARATH A0A384L4H7_ARATH | similarity | Belongs to the peptidase C15 family. |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
molecular function | |
pyroglutamyl-peptidase activity | ECO |
biological process | |
proteolysis | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...