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Gene : AT1G56500 A. thaliana

DB identifier  ? AT1G56500 Secondary Identifier  ? locus:2010728
Brief Description  haloacid dehalogenase-like hydrolase family protein
TAIR Computational Description  haloacid dehalogenase-like hydrolase family protein;(source:Araport11)
TAIR Curator Summary  Encodes a thylakoid membrane protein with thioredoxin-like and beta-propeller domains located in the lumen and a haloacid-dehalogenase domain exposed to the chloroplast stroma. The protein's role may be to prevent formation of a slowly reversible form of antenna quenching, thereby maintaining the efficiency of light harvesting. The mRNA is cell-to-cell mobile.
TAIR Short Description  haloacid dehalogenase-like hydrolase family protein
TAIR Aliases  SOQ1

2 Gene Rifs

1 Organism

18 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 7606  
Location: Chr1:21159736-21167341

Gene models - AT1G56500 AT1G56500

? Gene models

Transcripts: 3  Exons: 82  Introns: 79 

Overlapping Features

? Genome features that overlap coordinates of this Gene

35 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SOQ1_ARATH-6 SOQ1_ARATH-3 SOQ1_ARATH SOQ1_ARATH-2 SOQ1_ARATH-5 SOQ1_ARATH-4 function Required to maintain light harvesting efficiency, especially during nonphotochemical quenching (NPQ) recovery, via the regulation of chlorophyll excited-state lifetime probably by preventing the formation of a slowly reversible form of antenna quenching.
SOQ1_ARATH-6 SOQ1_ARATH-3 SOQ1_ARATH SOQ1_ARATH-2 SOQ1_ARATH-5 SOQ1_ARATH-4 similarity In the C-terminal section; belongs to the thioredoxin family.
SOQ1_ARATH-6 SOQ1_ARATH-3 SOQ1_ARATH SOQ1_ARATH-2 SOQ1_ARATH-5 SOQ1_ARATH-4 similarity In the N-terminal section; belongs to the HAD-like hydrolase superfamily.
SOQ1_ARATH-6 SOQ1_ARATH-3 SOQ1_ARATH SOQ1_ARATH-2 SOQ1_ARATH-5 SOQ1_ARATH-4 subcellular location Mostly localized in thylakoid grana margins, and, to a lower extent, in grana and stroma lamellae.

6 Proteins

Function

Gene Ontology

cellular component
chloroplast stroma  ? ECO  
chloroplast thylakoid  ? ECO  
chloroplast thylakoid membrane  ? ECO  
thylakoid membrane  ? ECO  
chloroplast  ? ECO  
nucleus  ? ECO  
molecular function
hydrolase activity  ? ECO  
metal ion binding  ? ECO  
biological process
nonphotochemical quenching  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets