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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56440:CDS:13 | 104 | Chr1: 21138765-21138868 | Arabidopsis thaliana |
AT1G56440:CDS:12 | 98 | Chr1: 21138985-21139082 | Arabidopsis thaliana |
AT1G56440:CDS:11 | 95 | Chr1: 21139164-21139258 | Arabidopsis thaliana |
AT1G56440:CDS:10 | 183 | Chr1: 21139337-21139519 | Arabidopsis thaliana |
AT1G56440:CDS:9 | 138 | Chr1: 21139614-21139751 | Arabidopsis thaliana |
AT1G56440:CDS:8 | 213 | Chr1: 21139938-21140150 | Arabidopsis thaliana |
AT1G56440:CDS:7 | 83 | Chr1: 21140239-21140321 | Arabidopsis thaliana |
AT1G56440:CDS:6 | 122 | Chr1: 21140426-21140547 | Arabidopsis thaliana |
AT1G56440:CDS:5 | 125 | Chr1: 21140679-21140803 | Arabidopsis thaliana |
AT1G56440:CDS:4 | 129 | Chr1: 21140888-21141016 | Arabidopsis thaliana |
AT1G56440:CDS:3 | 69 | Chr1: 21141102-21141170 | Arabidopsis thaliana |
AT1G56440:CDS:1 | 42 | Chr1: 21141441-21141482 | Arabidopsis thaliana |
AT1G56440:CDS:13.1 | 104 | Chr1: 21138765-21138868 | Arabidopsis thaliana |
AT1G56440:CDS:12.1 | 98 | Chr1: 21138985-21139082 | Arabidopsis thaliana |
AT1G56440:CDS:11.1 | 95 | Chr1: 21139164-21139258 | Arabidopsis thaliana |
AT1G56440:CDS:10.1 | 183 | Chr1: 21139337-21139519 | Arabidopsis thaliana |
AT1G56440:CDS:9.1 | 138 | Chr1: 21139614-21139751 | Arabidopsis thaliana |
AT1G56440:CDS:8.1 | 213 | Chr1: 21139938-21140150 | Arabidopsis thaliana |
AT1G56440:CDS:7.1 | 83 | Chr1: 21140239-21140321 | Arabidopsis thaliana |
AT1G56440:CDS:6.1 | 122 | Chr1: 21140426-21140547 | Arabidopsis thaliana |
AT1G56440:CDS:5.1 | 125 | Chr1: 21140679-21140803 | Arabidopsis thaliana |
AT1G56440:CDS:4.1 | 129 | Chr1: 21140888-21141016 | Arabidopsis thaliana |
AT1G56440:CDS:2 | 99 | Chr1: 21141102-21141200 | Arabidopsis thaliana |
AT1G56440:CDS:1.1 | 42 | Chr1: 21141441-21141482 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56440:exon:3 | 69 | Chr1: 21141102-21141170 | Arabidopsis thaliana |
AT1G56440:exon:13 | 354 | Chr1: 21138515-21138868 | Arabidopsis thaliana |
AT1G56440:exon:12 | 98 | Chr1: 21138985-21139082 | Arabidopsis thaliana |
AT1G56440:exon:11 | 95 | Chr1: 21139164-21139258 | Arabidopsis thaliana |
AT1G56440:exon:10 | 183 | Chr1: 21139337-21139519 | Arabidopsis thaliana |
AT1G56440:exon:9 | 138 | Chr1: 21139614-21139751 | Arabidopsis thaliana |
AT1G56440:exon:8 | 213 | Chr1: 21139938-21140150 | Arabidopsis thaliana |
AT1G56440:exon:7 | 83 | Chr1: 21140239-21140321 | Arabidopsis thaliana |
AT1G56440:exon:6 | 122 | Chr1: 21140426-21140547 | Arabidopsis thaliana |
AT1G56440:exon:5 | 125 | Chr1: 21140679-21140803 | Arabidopsis thaliana |
AT1G56440:exon:4 | 129 | Chr1: 21140888-21141016 | Arabidopsis thaliana |
AT1G56440:exon:2 | 99 | Chr1: 21141102-21141200 | Arabidopsis thaliana |
AT1G56440:exon:1 | 204 | Chr1: 21141441-21141644 | Arabidopsis thaliana |
AT1G56450:exon:1 | 346 | Chr1: 21141633-21141978 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56440:five_prime_UTR:1 | 162 | Chr1: 21141483-21141644 | Arabidopsis thaliana |
AT1G56450:five_prime_UTR:1 | 337 | Chr1: 21141633-21141969 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G56450 | locus:2010693 | PBG1 | 20S proteasome beta subunit G1 | 2826 | Chr1: 21141633-21144458 | A. thaliana | 20S proteasome beta subunit G1;(source:Araport11) | 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds | 20S proteasome beta subunit G1 | MUD1, PBG1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G56440.2 | 1813 | Chr1: 21138515-21141644 |
AT1G56440.1 | 1843 | Chr1: 21138515-21141644 |
AT1G56450.1 | 1350 | Chr1: 21141633-21144458 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G56440:three_prime_UTR:1 | 250 | Chr1: 21138515-21138764 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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