External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55830:CDS:8 | 229 | Chr1: 20867918-20868146 | Arabidopsis thaliana |
AT1G55830:CDS:7 | 225 | Chr1: 20868287-20868511 | Arabidopsis thaliana |
AT1G55830:CDS:6 | 147 | Chr1: 20868633-20868779 | Arabidopsis thaliana |
AT1G55830:CDS:5 | 224 | Chr1: 20868906-20869129 | Arabidopsis thaliana |
AT1G55830:CDS:2 | 414 | Chr1: 20869285-20869698 | Arabidopsis thaliana |
AT1G55830:CDS:8.1 | 229 | Chr1: 20867918-20868146 | Arabidopsis thaliana |
AT1G55830:CDS:7.1 | 225 | Chr1: 20868287-20868511 | Arabidopsis thaliana |
AT1G55830:CDS:6.1 | 147 | Chr1: 20868633-20868779 | Arabidopsis thaliana |
AT1G55830:CDS:5.1 | 224 | Chr1: 20868906-20869129 | Arabidopsis thaliana |
AT1G55830:CDS:3 | 396 | Chr1: 20869285-20869680 | Arabidopsis thaliana |
AT1G55830:CDS:1 | 261 | Chr1: 20869945-20870205 | Arabidopsis thaliana |
AT1G55830:CDS:8.2 | 229 | Chr1: 20867918-20868146 | Arabidopsis thaliana |
AT1G55830:CDS:7.2 | 225 | Chr1: 20868287-20868511 | Arabidopsis thaliana |
AT1G55830:CDS:6.2 | 147 | Chr1: 20868633-20868779 | Arabidopsis thaliana |
AT1G55830:CDS:5.2 | 224 | Chr1: 20868906-20869129 | Arabidopsis thaliana |
AT1G55830:CDS:4 | 276 | Chr1: 20869285-20869560 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55820:exon:9 | 637 | Chr1: 20867125-20867761 | Arabidopsis thaliana |
AT1G55830:exon:3 | 419 | Chr1: 20869285-20869703 | Arabidopsis thaliana |
AT1G55830:exon:2 | 373 | Chr1: 20869945-20870317 | Arabidopsis thaliana |
AT1G55830:exon:10 | 588 | Chr1: 20867559-20868146 | Arabidopsis thaliana |
AT1G55830:exon:4 | 396 | Chr1: 20869285-20869680 | Arabidopsis thaliana |
AT1G55830:exon:9 | 438 | Chr1: 20867709-20868146 | Arabidopsis thaliana |
AT1G55830:exon:8 | 225 | Chr1: 20868287-20868511 | Arabidopsis thaliana |
AT1G55830:exon:7 | 147 | Chr1: 20868633-20868779 | Arabidopsis thaliana |
AT1G55830:exon:6 | 224 | Chr1: 20868906-20869129 | Arabidopsis thaliana |
AT1G55830:exon:5 | 364 | Chr1: 20869285-20869648 | Arabidopsis thaliana |
AT1G55830:exon:1 | 394 | Chr1: 20869945-20870338 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55830:five_prime_UTR:4 | 5 | Chr1: 20869699-20869703 | Arabidopsis thaliana |
AT1G55830:five_prime_UTR:3 | 373 | Chr1: 20869945-20870317 | Arabidopsis thaliana |
AT1G55830:five_prime_UTR:1 | 133 | Chr1: 20870206-20870338 | Arabidopsis thaliana |
AT1G55830:five_prime_UTR:5 | 88 | Chr1: 20869561-20869648 | Arabidopsis thaliana |
AT1G55830:five_prime_UTR:2 | 394 | Chr1: 20869945-20870338 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G55820 | locus:2012015 | AT1G55820 | 3423 | Chr1: 20864339-20867761 | A. thaliana | lysine-specific demethylase, putative (DUF1296);(source:Araport11) | NULL | Kinase-related protein of unknown function (DUF1296) |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G55820.1 | 2129 | Chr1: 20864339-20867761 |
AT1G55830.1 | 1976 | Chr1: 20867559-20870317 |
AT1G55830.2 | 1974 | Chr1: 20867559-20870338 |
AT1G55830.3 | 1792 | Chr1: 20867709-20870338 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55820:three_prime_UTR:1 | 343 | Chr1: 20867419-20867761 | Arabidopsis thaliana |
AT1G55830:three_prime_UTR:2 | 359 | Chr1: 20867559-20867917 | Arabidopsis thaliana |
AT1G55830:three_prime_UTR:1 | 209 | Chr1: 20867709-20867917 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178WJZ6_ARATH | similarity | Belongs to the CCDC22 family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...