External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55690:CDS:15 | 24 | Chr1: 20808622-20808645 | Arabidopsis thaliana |
AT1G55690:CDS:13 | 75 | Chr1: 20808724-20808798 | Arabidopsis thaliana |
AT1G55690:CDS:12 | 392 | Chr1: 20808883-20809274 | Arabidopsis thaliana |
AT1G55690:CDS:11 | 160 | Chr1: 20809425-20809584 | Arabidopsis thaliana |
AT1G55690:CDS:10 | 114 | Chr1: 20809661-20809774 | Arabidopsis thaliana |
AT1G55690:CDS:9 | 99 | Chr1: 20809860-20809958 | Arabidopsis thaliana |
AT1G55690:CDS:8 | 103 | Chr1: 20810092-20810194 | Arabidopsis thaliana |
AT1G55690:CDS:7 | 50 | Chr1: 20810284-20810333 | Arabidopsis thaliana |
AT1G55690:CDS:6 | 105 | Chr1: 20810407-20810511 | Arabidopsis thaliana |
AT1G55690:CDS:5 | 78 | Chr1: 20810594-20810671 | Arabidopsis thaliana |
AT1G55690:CDS:4 | 267 | Chr1: 20810792-20811058 | Arabidopsis thaliana |
AT1G55690:CDS:3 | 100 | Chr1: 20811232-20811331 | Arabidopsis thaliana |
AT1G55690:CDS:2 | 304 | Chr1: 20811440-20811743 | Arabidopsis thaliana |
AT1G55690:CDS:1 | 7 | Chr1: 20811825-20811831 | Arabidopsis thaliana |
AT1G55690:CDS:15.1 | 24 | Chr1: 20808622-20808645 | Arabidopsis thaliana |
AT1G55690:CDS:13.1 | 75 | Chr1: 20808724-20808798 | Arabidopsis thaliana |
AT1G55690:CDS:12.1 | 392 | Chr1: 20808883-20809274 | Arabidopsis thaliana |
AT1G55690:CDS:11.1 | 160 | Chr1: 20809425-20809584 | Arabidopsis thaliana |
AT1G55690:CDS:10.1 | 114 | Chr1: 20809661-20809774 | Arabidopsis thaliana |
AT1G55690:CDS:9.1 | 99 | Chr1: 20809860-20809958 | Arabidopsis thaliana |
AT1G55690:CDS:8.1 | 103 | Chr1: 20810092-20810194 | Arabidopsis thaliana |
AT1G55690:CDS:7.1 | 50 | Chr1: 20810284-20810333 | Arabidopsis thaliana |
AT1G55690:CDS:6.1 | 105 | Chr1: 20810407-20810511 | Arabidopsis thaliana |
AT1G55690:CDS:5.1 | 78 | Chr1: 20810594-20810671 | Arabidopsis thaliana |
AT1G55690:CDS:4.1 | 267 | Chr1: 20810792-20811058 | Arabidopsis thaliana |
AT1G55690:CDS:3.1 | 100 | Chr1: 20811232-20811331 | Arabidopsis thaliana |
AT1G55690:CDS:2.1 | 304 | Chr1: 20811440-20811743 | Arabidopsis thaliana |
AT1G55690:CDS:1.1 | 7 | Chr1: 20811825-20811831 | Arabidopsis thaliana |
AT1G55690:CDS:15.2 | 24 | Chr1: 20808622-20808645 | Arabidopsis thaliana |
AT1G55690:CDS:13.2 | 75 | Chr1: 20808724-20808798 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55690:exon:23 | 447 | Chr1: 20808199-20808645 | Arabidopsis thaliana |
AT1G55690:exon:4 | 607 | Chr1: 20812424-20813030 | Arabidopsis thaliana |
AT1G55690:exon:22 | 422 | Chr1: 20808224-20808645 | Arabidopsis thaliana |
AT1G55690:exon:1 | 445 | Chr1: 20812617-20813061 | Arabidopsis thaliana |
AT1G55690:exon:21 | 237 | Chr1: 20808228-20808464 | Arabidopsis thaliana |
AT1G55690:exon:19 | 112 | Chr1: 20808534-20808645 | Arabidopsis thaliana |
AT1G55690:exon:18 | 75 | Chr1: 20808724-20808798 | Arabidopsis thaliana |
AT1G55690:exon:3 | 299 | Chr1: 20812617-20812915 | Arabidopsis thaliana |
AT1G55690:exon:20 | 538 | Chr1: 20808261-20808798 | Arabidopsis thaliana |
AT1G55690:exon:17 | 392 | Chr1: 20808883-20809274 | Arabidopsis thaliana |
AT1G55690:exon:16 | 160 | Chr1: 20809425-20809584 | Arabidopsis thaliana |
AT1G55690:exon:15 | 114 | Chr1: 20809661-20809774 | Arabidopsis thaliana |
AT1G55690:exon:14 | 99 | Chr1: 20809860-20809958 | Arabidopsis thaliana |
AT1G55690:exon:13 | 103 | Chr1: 20810092-20810194 | Arabidopsis thaliana |
AT1G55690:exon:12 | 50 | Chr1: 20810284-20810333 | Arabidopsis thaliana |
AT1G55690:exon:11 | 105 | Chr1: 20810407-20810511 | Arabidopsis thaliana |
AT1G55690:exon:10 | 78 | Chr1: 20810594-20810671 | Arabidopsis thaliana |
AT1G55690:exon:9 | 267 | Chr1: 20810792-20811058 | Arabidopsis thaliana |
AT1G55690:exon:8 | 100 | Chr1: 20811232-20811331 | Arabidopsis thaliana |
AT1G55690:exon:7 | 304 | Chr1: 20811440-20811743 | Arabidopsis thaliana |
AT1G55690:exon:6 | 98 | Chr1: 20811825-20811922 | Arabidopsis thaliana |
AT1G55690:exon:5 | 124 | Chr1: 20812173-20812296 | Arabidopsis thaliana |
AT1G55690:exon:2 | 356 | Chr1: 20812617-20812972 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55690:five_prime_UTR:4 | 607 | Chr1: 20812424-20813030 | Arabidopsis thaliana |
AT1G55690:five_prime_UTR:1 | 445 | Chr1: 20812617-20813061 | Arabidopsis thaliana |
AT1G55690:five_prime_UTR:3 | 299 | Chr1: 20812617-20812915 | Arabidopsis thaliana |
AT1G55690:five_prime_UTR:6 | 91 | Chr1: 20811832-20811922 | Arabidopsis thaliana |
AT1G55690:five_prime_UTR:5 | 124 | Chr1: 20812173-20812296 | Arabidopsis thaliana |
AT1G55690:five_prime_UTR:2 | 356 | Chr1: 20812617-20812972 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G55690.4 | 3123 | Chr1: 20808199-20813030 |
AT1G55690.5 | 2936 | Chr1: 20808224-20813061 |
AT1G55690.2 | 2812 | Chr1: 20808224-20813061 |
AT1G55690.1 | 2717 | Chr1: 20808228-20812915 |
AT1G55690.3 | 2888 | Chr1: 20808261-20812972 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G55690:three_prime_UTR:5 | 423 | Chr1: 20808199-20808621 | Arabidopsis thaliana |
AT1G55690:three_prime_UTR:4 | 398 | Chr1: 20808224-20808621 | Arabidopsis thaliana |
AT1G55690:three_prime_UTR:3 | 237 | Chr1: 20808228-20808464 | Arabidopsis thaliana |
AT1G55690:three_prime_UTR:1 | 88 | Chr1: 20808534-20808621 | Arabidopsis thaliana |
AT1G55690:three_prime_UTR:2 | 451 | Chr1: 20808261-20808711 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SFH13_ARATH | function | Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). |
F4I1W0_ARATH SFH13_ARATH | similarity | Belongs to the SFH family. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
Golgi membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
protein transport | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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