External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54680:CDS:1 | 192 | Chr1: 20413054-20413245 | Arabidopsis thaliana |
AT1G54680:CDS:4 | 93 | Chr1: 20413319-20413411 | Arabidopsis thaliana |
AT1G54680:CDS:6 | 72 | Chr1: 20413491-20413562 | Arabidopsis thaliana |
AT1G54680:CDS:7 | 144 | Chr1: 20413726-20413869 | Arabidopsis thaliana |
AT1G54680:CDS:9 | 54 | Chr1: 20413962-20414015 | Arabidopsis thaliana |
AT1G54680:CDS:10 | 96 | Chr1: 20414103-20414198 | Arabidopsis thaliana |
AT1G54680:CDS:11 | 201 | Chr1: 20414282-20414482 | Arabidopsis thaliana |
AT1G54680:CDS:1.1 | 192 | Chr1: 20413054-20413245 | Arabidopsis thaliana |
AT1G54680:CDS:4.1 | 93 | Chr1: 20413319-20413411 | Arabidopsis thaliana |
AT1G54680:CDS:6.1 | 72 | Chr1: 20413491-20413562 | Arabidopsis thaliana |
AT1G54680:CDS:7.1 | 144 | Chr1: 20413726-20413869 | Arabidopsis thaliana |
AT1G54680:CDS:8 | 72 | Chr1: 20413944-20414015 | Arabidopsis thaliana |
AT1G54680:CDS:10.1 | 96 | Chr1: 20414103-20414198 | Arabidopsis thaliana |
AT1G54680:CDS:11.1 | 201 | Chr1: 20414282-20414482 | Arabidopsis thaliana |
AT1G54680:CDS:2 | 159 | Chr1: 20413087-20413245 | Arabidopsis thaliana |
AT1G54680:CDS:4.2 | 93 | Chr1: 20413319-20413411 | Arabidopsis thaliana |
AT1G54680:CDS:6.2 | 72 | Chr1: 20413491-20413562 | Arabidopsis thaliana |
AT1G54680:CDS:7.2 | 144 | Chr1: 20413726-20413869 | Arabidopsis thaliana |
AT1G54680:CDS:8.1 | 72 | Chr1: 20413944-20414015 | Arabidopsis thaliana |
AT1G54680:CDS:10.2 | 96 | Chr1: 20414103-20414198 | Arabidopsis thaliana |
AT1G54680:CDS:11.2 | 201 | Chr1: 20414282-20414482 | Arabidopsis thaliana |
AT1G54680:CDS:3 | 35 | Chr1: 20413211-20413245 | Arabidopsis thaliana |
AT1G54680:CDS:5 | 52 | Chr1: 20413360-20413411 | Arabidopsis thaliana |
AT1G54680:CDS:6.3 | 72 | Chr1: 20413491-20413562 | Arabidopsis thaliana |
AT1G54680:CDS:7.3 | 144 | Chr1: 20413726-20413869 | Arabidopsis thaliana |
AT1G54680:CDS:9.1 | 54 | Chr1: 20413962-20414015 | Arabidopsis thaliana |
AT1G54680:CDS:10.3 | 96 | Chr1: 20414103-20414198 | Arabidopsis thaliana |
AT1G54680:CDS:11.3 | 201 | Chr1: 20414282-20414482 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54680:exon:1 | 234 | Chr1: 20413012-20413245 | Arabidopsis thaliana |
AT1G54680:exon:2 | 192 | Chr1: 20413054-20413245 | Arabidopsis thaliana |
AT1G54680:exon:3 | 190 | Chr1: 20413056-20413245 | Arabidopsis thaliana |
AT1G54680:exon:5 | 93 | Chr1: 20413319-20413411 | Arabidopsis thaliana |
AT1G54680:exon:9 | 72 | Chr1: 20413944-20414015 | Arabidopsis thaliana |
AT1G54680:exon:12 | 201 | Chr1: 20414282-20414482 | Arabidopsis thaliana |
AT1G54680:exon:4 | 111 | Chr1: 20413135-20413245 | Arabidopsis thaliana |
AT1G54680:exon:6 | 52 | Chr1: 20413360-20413411 | Arabidopsis thaliana |
AT1G54680:exon:7 | 72 | Chr1: 20413491-20413562 | Arabidopsis thaliana |
AT1G54680:exon:8 | 144 | Chr1: 20413726-20413869 | Arabidopsis thaliana |
AT1G54680:exon:10 | 54 | Chr1: 20413962-20414015 | Arabidopsis thaliana |
AT1G54680:exon:11 | 96 | Chr1: 20414103-20414198 | Arabidopsis thaliana |
AT1G54680:exon:13 | 293 | Chr1: 20414282-20414574 | Arabidopsis thaliana |
AT1G54690:exon:2 | 513 | Chr1: 20414316-20414828 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54680:five_prime_UTR:1 | 42 | Chr1: 20413012-20413053 | Arabidopsis thaliana |
AT1G54680:five_prime_UTR:2 | 31 | Chr1: 20413056-20413086 | Arabidopsis thaliana |
AT1G54680:five_prime_UTR:3 | 76 | Chr1: 20413135-20413210 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G54690 | locus:2199486 | GAMMA-H2AX | gamma histone variant H2AX | 972 | Chr1: 20414316-20415287 | A. thaliana | gamma histone variant H2AX;(source:Araport11) | Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10�20 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. | gamma histone variant H2AX | G-H2AX, GAMMA-H2AX, H2AXB, HTA3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G54680.1 | 894 | Chr1: 20413012-20414482 |
AT1G54680.4 | 870 | Chr1: 20413054-20414482 |
AT1G54680.2 | 868 | Chr1: 20413056-20414482 |
AT1G54680.3 | 822 | Chr1: 20413135-20414574 |
AT1G54690.1 | 801 | Chr1: 20414316-20415287 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54680:three_prime_UTR:1 | 92 | Chr1: 20414483-20414574 | Arabidopsis thaliana |
AT1G54690:three_prime_UTR:1 | 291 | Chr1: 20414316-20414606 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
ATP binding | ECO |
ATP-dependent peptidase activity | ECO |
metalloendopeptidase activity | ECO |
biological process | |
proteolysis | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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