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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54360:CDS:1 | 162 | Chr1: 20290558-20290719 | Arabidopsis thaliana |
AT1G54360:CDS:6 | 248 | Chr1: 20290789-20291036 | Arabidopsis thaliana |
AT1G54360:CDS:9 | 107 | Chr1: 20291124-20291230 | Arabidopsis thaliana |
AT1G54360:CDS:13 | 77 | Chr1: 20291302-20291378 | Arabidopsis thaliana |
AT1G54360:CDS:14 | 138 | Chr1: 20291458-20291595 | Arabidopsis thaliana |
AT1G54360:CDS:17 | 96 | Chr1: 20291688-20291783 | Arabidopsis thaliana |
AT1G54360:CDS:18 | 125 | Chr1: 20291880-20292004 | Arabidopsis thaliana |
AT1G54360:CDS:21 | 133 | Chr1: 20292088-20292220 | Arabidopsis thaliana |
AT1G54360:CDS:22 | 126 | Chr1: 20292431-20292556 | Arabidopsis thaliana |
AT1G54360:CDS:25 | 112 | Chr1: 20292661-20292772 | Arabidopsis thaliana |
AT1G54360:CDS:27 | 299 | Chr1: 20292862-20293160 | Arabidopsis thaliana |
AT1G54360:CDS:3 | 120 | Chr1: 20290600-20290719 | Arabidopsis thaliana |
AT1G54360:CDS:5 | 87 | Chr1: 20290789-20290875 | Arabidopsis thaliana |
AT1G54360:CDS:8 | 93 | Chr1: 20290944-20291036 | Arabidopsis thaliana |
AT1G54360:CDS:10 | 107 | Chr1: 20291124-20291230 | Arabidopsis thaliana |
AT1G54360:CDS:12 | 77 | Chr1: 20291302-20291378 | Arabidopsis thaliana |
AT1G54360:CDS:15 | 138 | Chr1: 20291458-20291595 | Arabidopsis thaliana |
AT1G54360:CDS:16 | 96 | Chr1: 20291688-20291783 | Arabidopsis thaliana |
AT1G54360:CDS:19 | 125 | Chr1: 20291880-20292004 | Arabidopsis thaliana |
AT1G54360:CDS:20 | 133 | Chr1: 20292088-20292220 | Arabidopsis thaliana |
AT1G54360:CDS:23 | 126 | Chr1: 20292431-20292556 | Arabidopsis thaliana |
AT1G54360:CDS:24 | 112 | Chr1: 20292661-20292772 | Arabidopsis thaliana |
AT1G54360:CDS:26 | 299 | Chr1: 20292862-20293160 | Arabidopsis thaliana |
AT1G54360:CDS:4 | 276 | Chr1: 20290600-20290875 | Arabidopsis thaliana |
AT1G54360:CDS:8.1 | 93 | Chr1: 20290944-20291036 | Arabidopsis thaliana |
AT1G54360:CDS:10.1 | 107 | Chr1: 20291124-20291230 | Arabidopsis thaliana |
AT1G54360:CDS:12.1 | 77 | Chr1: 20291302-20291378 | Arabidopsis thaliana |
AT1G54360:CDS:15.1 | 138 | Chr1: 20291458-20291595 | Arabidopsis thaliana |
AT1G54360:CDS:16.1 | 96 | Chr1: 20291688-20291783 | Arabidopsis thaliana |
AT1G54360:CDS:19.1 | 125 | Chr1: 20291880-20292004 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54360:exon:1 | 164 | Chr1: 20290556-20290719 | Arabidopsis thaliana |
AT1G54360:exon:2 | 304 | Chr1: 20290572-20290875 | Arabidopsis thaliana |
AT1G54360:exon:3 | 122 | Chr1: 20290598-20290719 | Arabidopsis thaliana |
AT1G54360:exon:6 | 87 | Chr1: 20290789-20290875 | Arabidopsis thaliana |
AT1G54360:exon:11 | 56 | Chr1: 20291302-20291357 | Arabidopsis thaliana |
AT1G54360:exon:21 | 463 | Chr1: 20292862-20293324 | Arabidopsis thaliana |
AT1G54360:exon:5 | 120 | Chr1: 20290600-20290719 | Arabidopsis thaliana |
AT1G54360:exon:7 | 248 | Chr1: 20290789-20291036 | Arabidopsis thaliana |
AT1G54360:exon:19 | 299 | Chr1: 20292862-20293160 | Arabidopsis thaliana |
AT1G54360:exon:4 | 96 | Chr1: 20290600-20290695 | Arabidopsis thaliana |
AT1G54360:exon:8 | 27 | Chr1: 20290849-20290875 | Arabidopsis thaliana |
AT1G54360:exon:9 | 93 | Chr1: 20290944-20291036 | Arabidopsis thaliana |
AT1G54360:exon:10 | 107 | Chr1: 20291124-20291230 | Arabidopsis thaliana |
AT1G54360:exon:12 | 77 | Chr1: 20291302-20291378 | Arabidopsis thaliana |
AT1G54360:exon:13 | 138 | Chr1: 20291458-20291595 | Arabidopsis thaliana |
AT1G54360:exon:14 | 96 | Chr1: 20291688-20291783 | Arabidopsis thaliana |
AT1G54360:exon:15 | 125 | Chr1: 20291880-20292004 | Arabidopsis thaliana |
AT1G54360:exon:16 | 133 | Chr1: 20292088-20292220 | Arabidopsis thaliana |
AT1G54360:exon:17 | 126 | Chr1: 20292431-20292556 | Arabidopsis thaliana |
AT1G54360:exon:18 | 112 | Chr1: 20292661-20292772 | Arabidopsis thaliana |
AT1G54360:exon:20 | 405 | Chr1: 20292862-20293266 | Arabidopsis thaliana |
AT1G54370:exon:21 | 290 | Chr1: 20293151-20293440 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54360:five_prime_UTR:1 | 2 | Chr1: 20290556-20290557 | Arabidopsis thaliana |
AT1G54360:five_prime_UTR:2 | 44 | Chr1: 20290556-20290599 | Arabidopsis thaliana |
AT1G54360:five_prime_UTR:3 | 28 | Chr1: 20290572-20290599 | Arabidopsis thaliana |
AT1G54360:five_prime_UTR:4 | 2 | Chr1: 20290598-20290599 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G54370 | locus:2020068 | NHX5 | sodium hydrogen exchanger 5 | 4086 | Chr1: 20293151-20297236 | A. thaliana | sodium hydrogen exchanger 5;(source:Araport11) | Encodes an endosomal Na(+)/H(+) antiporter: AT1G54370 (NHX5), AT1G79610 (NHX6). Double knockout nhx5 nhx6 showed reduced growth, with smaller and fewer cells and increased sensitivity to salinity. | sodium hydrogen exchanger 5 | ATNHX5, NHX5 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G54360.6 | 1625 | Chr1: 20290556-20293160 |
AT1G54360.1 | 1663 | Chr1: 20290556-20293266 |
AT1G54360.2 | 1716 | Chr1: 20290572-20293266 |
AT1G54360.3 | 1658 | Chr1: 20290598-20293324 |
AT1G54360.4 | 1581 | Chr1: 20290600-20293160 |
AT1G54360.5 | 1535 | Chr1: 20290600-20293266 |
AT1G54370.1 | 1875 | Chr1: 20293151-20297236 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G54360:three_prime_UTR:2 | 164 | Chr1: 20293161-20293324 | Arabidopsis thaliana |
AT1G54360:three_prime_UTR:1 | 106 | Chr1: 20293161-20293266 | Arabidopsis thaliana |
AT1G54370:three_prime_UTR:1 | 202 | Chr1: 20293151-20293352 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A2H1ZEC9_ARATH | similarity | Belongs to the TAF6 family. |
Function
Gene Ontology
cellular component | |
---|---|
transcription factor TFIID complex | ECO |
SLIK (SAGA-like) complex | ECO |
SAGA complex | ECO |
molecular function | |
RNA polymerase II general transcription initiation factor activity | ECO |
protein heterodimerization activity | ECO |
biological process | |
transcription initiation at RNA polymerase II promoter | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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