External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G50450:CDS:13 | 58 | Chr1: 18687902-18687959 | Arabidopsis thaliana |
AT1G50450:CDS:12 | 80 | Chr1: 18688057-18688136 | Arabidopsis thaliana |
AT1G50450:CDS:11 | 82 | Chr1: 18688225-18688306 | Arabidopsis thaliana |
AT1G50450:CDS:10 | 65 | Chr1: 18688391-18688455 | Arabidopsis thaliana |
AT1G50450:CDS:9 | 102 | Chr1: 18688543-18688644 | Arabidopsis thaliana |
AT1G50450:CDS:8 | 124 | Chr1: 18688737-18688860 | Arabidopsis thaliana |
AT1G50450:CDS:7 | 85 | Chr1: 18688936-18689020 | Arabidopsis thaliana |
AT1G50450:CDS:6 | 98 | Chr1: 18689116-18689213 | Arabidopsis thaliana |
AT1G50450:CDS:5 | 64 | Chr1: 18689320-18689383 | Arabidopsis thaliana |
AT1G50450:CDS:4 | 127 | Chr1: 18689474-18689600 | Arabidopsis thaliana |
AT1G50450:CDS:3 | 83 | Chr1: 18689713-18689795 | Arabidopsis thaliana |
AT1G50450:CDS:2 | 98 | Chr1: 18689945-18690042 | Arabidopsis thaliana |
AT1G50450:CDS:1 | 221 | Chr1: 18690128-18690348 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G50440:exon:12 | 351 | Chr1: 18687557-18687907 | Arabidopsis thaliana |
AT1G50440:exon:11 | 307 | Chr1: 18687557-18687863 | Arabidopsis thaliana |
AT1G50450:exon:13 | 175 | Chr1: 18687785-18687959 | Arabidopsis thaliana |
AT1G50450:exon:12 | 80 | Chr1: 18688057-18688136 | Arabidopsis thaliana |
AT1G50450:exon:11 | 82 | Chr1: 18688225-18688306 | Arabidopsis thaliana |
AT1G50450:exon:10 | 65 | Chr1: 18688391-18688455 | Arabidopsis thaliana |
AT1G50450:exon:9 | 102 | Chr1: 18688543-18688644 | Arabidopsis thaliana |
AT1G50450:exon:8 | 124 | Chr1: 18688737-18688860 | Arabidopsis thaliana |
AT1G50450:exon:7 | 85 | Chr1: 18688936-18689020 | Arabidopsis thaliana |
AT1G50450:exon:6 | 98 | Chr1: 18689116-18689213 | Arabidopsis thaliana |
AT1G50450:exon:5 | 64 | Chr1: 18689320-18689383 | Arabidopsis thaliana |
AT1G50450:exon:4 | 127 | Chr1: 18689474-18689600 | Arabidopsis thaliana |
AT1G50450:exon:3 | 83 | Chr1: 18689713-18689795 | Arabidopsis thaliana |
AT1G50450:exon:2 | 98 | Chr1: 18689945-18690042 | Arabidopsis thaliana |
AT1G50450:exon:1 | 376 | Chr1: 18690128-18690503 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G50450:five_prime_UTR:1 | 155 | Chr1: 18690349-18690503 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G50440 | locus:2008056 | AT1G50440 | 2139 | Chr1: 18685769-18687907 | A. thaliana | RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11) | NULL | RING/FYVE/PHD zinc finger superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G50440.1 | 1250 | Chr1: 18685769-18687907 |
AT1G50440.2 | 1333 | Chr1: 18685780-18687907 |
AT1G50440.3 | 1165 | Chr1: 18685808-18687863 |
AT1G50450.1 | 1559 | Chr1: 18687785-18690503 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G50440:three_prime_UTR:2 | 261 | Chr1: 18687647-18687907 | Arabidopsis thaliana |
AT1G50440:three_prime_UTR:1 | 217 | Chr1: 18687647-18687863 | Arabidopsis thaliana |
AT1G50450:three_prime_UTR:1 | 117 | Chr1: 18687785-18687901 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...