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Gene : AT1G50410 A. thaliana

DB identifier  ? AT1G50410 Secondary Identifier  ? locus:2008096
Brief Description  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
TAIR Computational Description  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein;(source:Araport11)
TAIR Curator Summary  Encodes a member of the SNF2 family of helicase-like proteins and is involved in RNA-directed DNA methylation. It is functionally redundant with FRG1.
TAIR Short Description  SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
TAIR Aliases  CHR28, FRG2

1 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5521  
Location: Chr1:18672132-18677652

Gene models - AT1G50410 AT1G50410

? Gene models

Transcripts: 4  Exons: 43  Introns: 39 

Overlapping Features

? Genome features that overlap coordinates of this Gene

20 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CHR28_ARATH function Probable helicase-like transcription factor involved in transcriptional gene silencing. Associates with SUVR2 and contributes to transcriptional gene silencing at RNA-directed DNA methylation (RdDM) target loci but also at RdDM-independent target loci. May be involved in nucleosome positioning to form ordered nucleosome arrays on chromatin (PubMed:25420628). Associates with SUVR2 and functions redundantly with FRG1. Required for the efficient methylation of a broad range of RdDM target loci (PubMed:25425661).
A0A1P8AWQ0_ARATH CHR28_ARATH similarity Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
ATP binding  ? ECO  
ATP-dependent chromatin remodeler activity  ? ECO  
DNA binding  ? ECO  
helicase activity  ? ECO  
hydrolase activity  ? ECO  
metal ion binding  ? ECO  
biological process
gene silencing by siRNA-directed DNA methylation  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets