External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G50000:CDS:12 | 146 | Chr1: 18515183-18515328 | Arabidopsis thaliana |
AT1G50000:CDS:11 | 115 | Chr1: 18515544-18515658 | Arabidopsis thaliana |
AT1G50000:CDS:8 | 62 | Chr1: 18515764-18515825 | Arabidopsis thaliana |
AT1G50000:CDS:6 | 109 | Chr1: 18515938-18516046 | Arabidopsis thaliana |
AT1G50000:CDS:4 | 47 | Chr1: 18516129-18516175 | Arabidopsis thaliana |
AT1G50000:CDS:3 | 143 | Chr1: 18516273-18516415 | Arabidopsis thaliana |
AT1G50000:CDS:2 | 74 | Chr1: 18516736-18516809 | Arabidopsis thaliana |
AT1G50000:CDS:1 | 195 | Chr1: 18517050-18517244 | Arabidopsis thaliana |
AT1G50000:CDS:10 | 3 | Chr1: 18515595-18515597 | Arabidopsis thaliana |
AT1G50000:CDS:8.1 | 62 | Chr1: 18515764-18515825 | Arabidopsis thaliana |
AT1G50000:CDS:6.1 | 109 | Chr1: 18515938-18516046 | Arabidopsis thaliana |
AT1G50000:CDS:4.1 | 47 | Chr1: 18516129-18516175 | Arabidopsis thaliana |
AT1G50000:CDS:3.1 | 143 | Chr1: 18516273-18516415 | Arabidopsis thaliana |
AT1G50000:CDS:2.1 | 74 | Chr1: 18516736-18516809 | Arabidopsis thaliana |
AT1G50000:CDS:1.1 | 195 | Chr1: 18517050-18517244 | Arabidopsis thaliana |
AT1G50000:CDS:10.1 | 3 | Chr1: 18515595-18515597 | Arabidopsis thaliana |
AT1G50000:CDS:7 | 20 | Chr1: 18515806-18515825 | Arabidopsis thaliana |
AT1G50000:CDS:6.2 | 109 | Chr1: 18515938-18516046 | Arabidopsis thaliana |
AT1G50000:CDS:4.2 | 47 | Chr1: 18516129-18516175 | Arabidopsis thaliana |
AT1G50000:CDS:3.2 | 143 | Chr1: 18516273-18516415 | Arabidopsis thaliana |
AT1G50000:CDS:2.2 | 74 | Chr1: 18516736-18516809 | Arabidopsis thaliana |
AT1G50000:CDS:1.2 | 195 | Chr1: 18517050-18517244 | Arabidopsis thaliana |
AT1G50000:CDS:9 | 95 | Chr1: 18515731-18515825 | Arabidopsis thaliana |
AT1G50000:CDS:6.3 | 109 | Chr1: 18515938-18516046 | Arabidopsis thaliana |
AT1G50000:CDS:4.3 | 47 | Chr1: 18516129-18516175 | Arabidopsis thaliana |
AT1G50000:CDS:3.3 | 143 | Chr1: 18516273-18516415 | Arabidopsis thaliana |
AT1G50000:CDS:2.3 | 74 | Chr1: 18516736-18516809 | Arabidopsis thaliana |
AT1G50000:CDS:1.3 | 195 | Chr1: 18517050-18517244 | Arabidopsis thaliana |
AT1G50000:CDS:5 | 65 | Chr1: 18516111-18516175 | Arabidopsis thaliana |
AT1G50000:CDS:3.4 | 143 | Chr1: 18516273-18516415 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G49990:exon:1 | 1472 | Chr1: 18513628-18515099 | Arabidopsis thaliana |
AT1G50000:exon:15 | 270 | Chr1: 18515059-18515328 | Arabidopsis thaliana |
AT1G50000:exon:12 | 115 | Chr1: 18515544-18515658 | Arabidopsis thaliana |
AT1G50000:exon:14 | 260 | Chr1: 18515069-18515328 | Arabidopsis thaliana |
AT1G50000:exon:13 | 54 | Chr1: 18515544-18515597 | Arabidopsis thaliana |
AT1G50000:exon:9 | 62 | Chr1: 18515764-18515825 | Arabidopsis thaliana |
AT1G50000:exon:11 | 3 | Chr1: 18515595-18515597 | Arabidopsis thaliana |
AT1G50000:exon:8 | 20 | Chr1: 18515806-18515825 | Arabidopsis thaliana |
AT1G50000:exon:10 | 95 | Chr1: 18515731-18515825 | Arabidopsis thaliana |
AT1G50000:exon:7 | 109 | Chr1: 18515938-18516046 | Arabidopsis thaliana |
AT1G50000:exon:5 | 47 | Chr1: 18516129-18516175 | Arabidopsis thaliana |
AT1G50000:exon:1 | 241 | Chr1: 18517050-18517290 | Arabidopsis thaliana |
AT1G50000:exon:6 | 82 | Chr1: 18516094-18516175 | Arabidopsis thaliana |
AT1G50000:exon:4 | 143 | Chr1: 18516273-18516415 | Arabidopsis thaliana |
AT1G50000:exon:3 | 74 | Chr1: 18516736-18516809 | Arabidopsis thaliana |
AT1G50000:exon:2 | 196 | Chr1: 18517050-18517245 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G50000:five_prime_UTR:1 | 46 | Chr1: 18517245-18517290 | Arabidopsis thaliana |
AT1G50000:five_prime_UTR:2 | 1 | Chr1: 18517245-18517245 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G49990 | locus:2031080 | AT1G49990 | 1476 | Chr1: 18513624-18515099 | A. thaliana | F-box family protein;(source:Araport11) | NULL | F-box family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G49990.1 | 1472 | Chr1: 18513624-18515099 |
AT1G50000.1 | 1061 | Chr1: 18515059-18517290 |
AT1G50000.2 | 990 | Chr1: 18515069-18517290 |
AT1G50000.3 | 637 | Chr1: 18515595-18517290 |
AT1G50000.4 | 709 | Chr1: 18515731-18517290 |
AT1G50000.5 | 495 | Chr1: 18516094-18517245 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G49990:three_prime_UTR:1 | 111 | Chr1: 18514989-18515099 | Arabidopsis thaliana |
AT1G50000:three_prime_UTR:4 | 124 | Chr1: 18515059-18515182 | Arabidopsis thaliana |
AT1G50000:three_prime_UTR:3 | 260 | Chr1: 18515069-18515328 | Arabidopsis thaliana |
AT1G50000:three_prime_UTR:2 | 51 | Chr1: 18515544-18515594 | Arabidopsis thaliana |
AT1G50000:three_prime_UTR:1 | 17 | Chr1: 18516094-18516110 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q6E295_ARATH Q6E297_ARATH A0A1P8AQL0_ARATH A0A1P8AQL1_ARATH | function | Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. |
Q6E295_ARATH Q6E297_ARATH A0A1P8AQL0_ARATH A0A1P8AQL1_ARATH | similarity | Belongs to the RNA methyltransferase RsmE family. |
Function
Gene Ontology
cellular component | |
---|---|
cytoplasm | ECO |
molecular function | |
methyltransferase activity | ECO |
biological process | |
rRNA processing | ECO |
methylation | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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