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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G49940:CDS:8 | 14 | Chr1: 18488894-18488907 | Arabidopsis thaliana |
AT1G49940:CDS:7 | 79 | Chr1: 18488983-18489061 | Arabidopsis thaliana |
AT1G49940:CDS:6 | 102 | Chr1: 18489499-18489600 | Arabidopsis thaliana |
AT1G49940:CDS:5 | 92 | Chr1: 18489681-18489772 | Arabidopsis thaliana |
AT1G49940:CDS:4 | 78 | Chr1: 18489900-18489977 | Arabidopsis thaliana |
AT1G49940:CDS:3 | 34 | Chr1: 18490248-18490281 | Arabidopsis thaliana |
AT1G49940:CDS:2 | 133 | Chr1: 18490486-18490618 | Arabidopsis thaliana |
AT1G49940:CDS:1 | 104 | Chr1: 18490717-18490820 | Arabidopsis thaliana |
AT1G49940:CDS:10 | 44 | Chr1: 18488360-18488403 | Arabidopsis thaliana |
AT1G49940:CDS:7.1 | 79 | Chr1: 18488983-18489061 | Arabidopsis thaliana |
AT1G49940:CDS:6.1 | 102 | Chr1: 18489499-18489600 | Arabidopsis thaliana |
AT1G49940:CDS:5.1 | 92 | Chr1: 18489681-18489772 | Arabidopsis thaliana |
AT1G49940:CDS:4.1 | 78 | Chr1: 18489900-18489977 | Arabidopsis thaliana |
AT1G49940:CDS:3.1 | 34 | Chr1: 18490248-18490281 | Arabidopsis thaliana |
AT1G49940:CDS:2.1 | 133 | Chr1: 18490486-18490618 | Arabidopsis thaliana |
AT1G49940:CDS:1.1 | 104 | Chr1: 18490717-18490820 | Arabidopsis thaliana |
AT1G49940:CDS:8.1 | 14 | Chr1: 18488894-18488907 | Arabidopsis thaliana |
AT1G49940:CDS:7.2 | 79 | Chr1: 18488983-18489061 | Arabidopsis thaliana |
AT1G49940:CDS:2.2 | 133 | Chr1: 18490486-18490618 | Arabidopsis thaliana |
AT1G49940:CDS:1.2 | 104 | Chr1: 18490717-18490820 | Arabidopsis thaliana |
AT1G49940:CDS:9 | 71 | Chr1: 18488661-18488731 | Arabidopsis thaliana |
AT1G49940:CDS:7.3 | 79 | Chr1: 18488983-18489061 | Arabidopsis thaliana |
AT1G49940:CDS:6.2 | 102 | Chr1: 18489499-18489600 | Arabidopsis thaliana |
AT1G49940:CDS:5.2 | 92 | Chr1: 18489681-18489772 | Arabidopsis thaliana |
AT1G49940:CDS:4.2 | 78 | Chr1: 18489900-18489977 | Arabidopsis thaliana |
AT1G49940:CDS:3.2 | 34 | Chr1: 18490248-18490281 | Arabidopsis thaliana |
AT1G49940:CDS:2.3 | 133 | Chr1: 18490486-18490618 | Arabidopsis thaliana |
AT1G49940:CDS:1.3 | 104 | Chr1: 18490717-18490820 | Arabidopsis thaliana |
AT1G49940:CDS:8.2 | 14 | Chr1: 18488894-18488907 | Arabidopsis thaliana |
AT1G49940:CDS:7.4 | 79 | Chr1: 18488983-18489061 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G49938:exon:1 | 77 | Chr1: 18488447-18488523 | Arabidopsis thaliana |
AT1G49938:exon:3 | 207 | Chr1: 18487960-18488166 | Arabidopsis thaliana |
AT1G49938:exon:2 | 60 | Chr1: 18488447-18488506 | Arabidopsis thaliana |
AT1G49940:exon:17 | 40 | Chr1: 18488127-18488166 | Arabidopsis thaliana |
AT1G49940:exon:14 | 285 | Chr1: 18488447-18488731 | Arabidopsis thaliana |
AT1G49940:exon:16 | 44 | Chr1: 18488360-18488403 | Arabidopsis thaliana |
AT1G49940:exon:15 | 106 | Chr1: 18488425-18488530 | Arabidopsis thaliana |
AT1G49940:exon:12 | 121 | Chr1: 18488611-18488731 | Arabidopsis thaliana |
AT1G49940:exon:2 | 54 | Chr1: 18491126-18491179 | Arabidopsis thaliana |
AT1G49940:exon:13 | 215 | Chr1: 18488517-18488731 | Arabidopsis thaliana |
AT1G49940:exon:11 | 81 | Chr1: 18488827-18488907 | Arabidopsis thaliana |
AT1G49940:exon:10 | 79 | Chr1: 18488983-18489061 | Arabidopsis thaliana |
AT1G49940:exon:9 | 102 | Chr1: 18489499-18489600 | Arabidopsis thaliana |
AT1G49940:exon:8 | 92 | Chr1: 18489681-18489772 | Arabidopsis thaliana |
AT1G49940:exon:7 | 78 | Chr1: 18489900-18489977 | Arabidopsis thaliana |
AT1G49940:exon:6 | 34 | Chr1: 18490248-18490281 | Arabidopsis thaliana |
AT1G49940:exon:5 | 133 | Chr1: 18490486-18490618 | Arabidopsis thaliana |
AT1G49940:exon:4 | 150 | Chr1: 18490717-18490866 | Arabidopsis thaliana |
AT1G49940:exon:3 | 57 | Chr1: 18490965-18491021 | Arabidopsis thaliana |
AT1G49940:exon:1 | 644 | Chr1: 18491126-18491769 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G49940:five_prime_UTR:2 | 54 | Chr1: 18491126-18491179 | Arabidopsis thaliana |
AT1G49940:five_prime_UTR:4 | 46 | Chr1: 18490821-18490866 | Arabidopsis thaliana |
AT1G49940:five_prime_UTR:3 | 57 | Chr1: 18490965-18491021 | Arabidopsis thaliana |
AT1G49940:five_prime_UTR:1 | 644 | Chr1: 18491126-18491769 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G49938 | locus:5019474652 | AT1G49938 | 1782 | Chr1: 18486742-18488523 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
Lnc RNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G49938.2 | 1024 | Chr1: 18486742-18488523 |
AT1G49938.1 | 621 | Chr1: 18487277-18488506 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G49940.3 | 1185 | Chr1: 18488127-18491179 |
AT1G49940.2 | 823 | Chr1: 18488360-18491179 |
AT1G49940.4 | 781 | Chr1: 18488425-18491179 |
AT1G49940.1 | 994 | Chr1: 18488517-18491179 |
AT1G49940.5 | 1665 | Chr1: 18488517-18491769 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G49940:three_prime_UTR:7 | 40 | Chr1: 18488127-18488166 | Arabidopsis thaliana |
AT1G49940:three_prime_UTR:5 | 285 | Chr1: 18488447-18488731 | Arabidopsis thaliana |
AT1G49940:three_prime_UTR:6 | 106 | Chr1: 18488425-18488530 | Arabidopsis thaliana |
AT1G49940:three_prime_UTR:2 | 121 | Chr1: 18488611-18488731 | Arabidopsis thaliana |
AT1G49940:three_prime_UTR:4 | 144 | Chr1: 18488517-18488660 | Arabidopsis thaliana |
AT1G49940:three_prime_UTR:3 | 215 | Chr1: 18488517-18488731 | Arabidopsis thaliana |
AT1G49940:three_prime_UTR:1 | 67 | Chr1: 18488827-18488893 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...