External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48540:CDS:1 | 441 | Chr1: 17945540-17945980 | Arabidopsis thaliana |
AT1G48540:CDS:2 | 258 | Chr1: 17946081-17946338 | Arabidopsis thaliana |
AT1G48540:CDS:3 | 243 | Chr1: 17946573-17946815 | Arabidopsis thaliana |
AT1G48540:CDS:4 | 150 | Chr1: 17946930-17947079 | Arabidopsis thaliana |
AT1G48540:CDS:5 | 1373 | Chr1: 17947318-17948690 | Arabidopsis thaliana |
AT1G48540:CDS:6 | 74 | Chr1: 17949042-17949115 | Arabidopsis thaliana |
AT1G48540:CDS:7 | 82 | Chr1: 17949199-17949280 | Arabidopsis thaliana |
AT1G48540:CDS:8 | 126 | Chr1: 17949365-17949490 | Arabidopsis thaliana |
AT1G48540:CDS:9 | 107 | Chr1: 17949570-17949676 | Arabidopsis thaliana |
AT1G48540:CDS:10 | 158 | Chr1: 17949994-17950151 | Arabidopsis thaliana |
AT1G48540:CDS:12 | 180 | Chr1: 17950226-17950405 | Arabidopsis thaliana |
AT1G48540:CDS:1.1 | 441 | Chr1: 17945540-17945980 | Arabidopsis thaliana |
AT1G48540:CDS:2.1 | 258 | Chr1: 17946081-17946338 | Arabidopsis thaliana |
AT1G48540:CDS:3.1 | 243 | Chr1: 17946573-17946815 | Arabidopsis thaliana |
AT1G48540:CDS:4.1 | 150 | Chr1: 17946930-17947079 | Arabidopsis thaliana |
AT1G48540:CDS:5.1 | 1373 | Chr1: 17947318-17948690 | Arabidopsis thaliana |
AT1G48540:CDS:6.1 | 74 | Chr1: 17949042-17949115 | Arabidopsis thaliana |
AT1G48540:CDS:7.1 | 82 | Chr1: 17949199-17949280 | Arabidopsis thaliana |
AT1G48540:CDS:8.1 | 126 | Chr1: 17949365-17949490 | Arabidopsis thaliana |
AT1G48540:CDS:9.1 | 107 | Chr1: 17949570-17949676 | Arabidopsis thaliana |
AT1G48540:CDS:11 | 203 | Chr1: 17949994-17950196 | Arabidopsis thaliana |
AT1G48540:CDS:1.2 | 441 | Chr1: 17945540-17945980 | Arabidopsis thaliana |
AT1G48540:CDS:2.2 | 258 | Chr1: 17946081-17946338 | Arabidopsis thaliana |
AT1G48540:CDS:3.2 | 243 | Chr1: 17946573-17946815 | Arabidopsis thaliana |
AT1G48540:CDS:4.2 | 150 | Chr1: 17946930-17947079 | Arabidopsis thaliana |
AT1G48540:CDS:5.2 | 1373 | Chr1: 17947318-17948690 | Arabidopsis thaliana |
AT1G48540:CDS:6.2 | 74 | Chr1: 17949042-17949115 | Arabidopsis thaliana |
AT1G48540:CDS:7.2 | 82 | Chr1: 17949199-17949280 | Arabidopsis thaliana |
AT1G48540:CDS:8.2 | 126 | Chr1: 17949365-17949490 | Arabidopsis thaliana |
AT1G48540:CDS:9.2 | 107 | Chr1: 17949570-17949676 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48540:exon:13 | 373 | Chr1: 17950226-17950598 | Arabidopsis thaliana |
AT1G48540:exon:1 | 612 | Chr1: 17945369-17945980 | Arabidopsis thaliana |
AT1G48540:exon:12 | 605 | Chr1: 17949994-17950598 | Arabidopsis thaliana |
AT1G48540:exon:2 | 605 | Chr1: 17945376-17945980 | Arabidopsis thaliana |
AT1G48540:exon:3 | 258 | Chr1: 17946081-17946338 | Arabidopsis thaliana |
AT1G48540:exon:4 | 243 | Chr1: 17946573-17946815 | Arabidopsis thaliana |
AT1G48540:exon:5 | 150 | Chr1: 17946930-17947079 | Arabidopsis thaliana |
AT1G48540:exon:6 | 1373 | Chr1: 17947318-17948690 | Arabidopsis thaliana |
AT1G48540:exon:7 | 74 | Chr1: 17949042-17949115 | Arabidopsis thaliana |
AT1G48540:exon:8 | 82 | Chr1: 17949199-17949280 | Arabidopsis thaliana |
AT1G48540:exon:9 | 126 | Chr1: 17949365-17949490 | Arabidopsis thaliana |
AT1G48540:exon:10 | 107 | Chr1: 17949570-17949676 | Arabidopsis thaliana |
AT1G48540:exon:11 | 158 | Chr1: 17949994-17950151 | Arabidopsis thaliana |
AT1G48540:exon:14 | 260 | Chr1: 17950262-17950521 | Arabidopsis thaliana |
AT1G48550:exon:15 | 286 | Chr1: 17950569-17950854 | Arabidopsis thaliana |
AT1G48550:exon:14 | 276 | Chr1: 17950579-17950854 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48540:five_prime_UTR:1 | 171 | Chr1: 17945369-17945539 | Arabidopsis thaliana |
AT1G48540:five_prime_UTR:2 | 164 | Chr1: 17945376-17945539 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G48550 | locus:2198075 | AT1G48550 | 2175 | Chr1: 17950569-17952743 | A. thaliana | Vacuolar protein sorting-associated protein 26;(source:Araport11) | VPS26C is a component of a retromer complex, it is involved in endosome to lysosome protein transport and root hair growth. | Vacuolar protein sorting-associated protein 26 | VPS26C |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G48540.1 | 3556 | Chr1: 17945369-17950598 |
AT1G48540.3 | 3630 | Chr1: 17945369-17950598 |
AT1G48540.2 | 3436 | Chr1: 17945376-17950521 |
AT1G48550.2 | 1247 | Chr1: 17950569-17952694 |
AT1G48550.1 | 1295 | Chr1: 17950579-17952743 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48540:three_prime_UTR:3 | 193 | Chr1: 17950406-17950598 | Arabidopsis thaliana |
AT1G48540:three_prime_UTR:1 | 402 | Chr1: 17950197-17950598 | Arabidopsis thaliana |
AT1G48540:three_prime_UTR:2 | 116 | Chr1: 17950406-17950521 | Arabidopsis thaliana |
AT1G48550:three_prime_UTR:2 | 223 | Chr1: 17950569-17950791 | Arabidopsis thaliana |
AT1G48550:three_prime_UTR:1 | 213 | Chr1: 17950579-17950791 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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