External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 76, Exons: 26, Five Prime UTRs: 7, Gene: 1, mRNAs: 7, Three Prime UTRs: 9, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48360:CDS:1 | 93 | Chr1: 17868661-17868753 | Arabidopsis thaliana |
AT1G48360:CDS:2 | 112 | Chr1: 17868837-17868948 | Arabidopsis thaliana |
AT1G48360:CDS:3 | 389 | Chr1: 17869038-17869426 | Arabidopsis thaliana |
AT1G48360:CDS:4 | 96 | Chr1: 17869518-17869613 | Arabidopsis thaliana |
AT1G48360:CDS:6 | 265 | Chr1: 17869716-17869980 | Arabidopsis thaliana |
AT1G48360:CDS:7 | 63 | Chr1: 17870080-17870142 | Arabidopsis thaliana |
AT1G48360:CDS:8 | 75 | Chr1: 17870604-17870678 | Arabidopsis thaliana |
AT1G48360:CDS:9 | 116 | Chr1: 17870775-17870890 | Arabidopsis thaliana |
AT1G48360:CDS:10 | 71 | Chr1: 17870989-17871059 | Arabidopsis thaliana |
AT1G48360:CDS:11 | 88 | Chr1: 17871160-17871247 | Arabidopsis thaliana |
AT1G48360:CDS:12 | 141 | Chr1: 17871319-17871459 | Arabidopsis thaliana |
AT1G48360:CDS:14 | 206 | Chr1: 17871533-17871738 | Arabidopsis thaliana |
AT1G48360:CDS:17 | 274 | Chr1: 17871824-17872097 | Arabidopsis thaliana |
AT1G48360:CDS:19 | 252 | Chr1: 17872185-17872436 | Arabidopsis thaliana |
AT1G48360:CDS:1.1 | 93 | Chr1: 17868661-17868753 | Arabidopsis thaliana |
AT1G48360:CDS:2.1 | 112 | Chr1: 17868837-17868948 | Arabidopsis thaliana |
AT1G48360:CDS:3.1 | 389 | Chr1: 17869038-17869426 | Arabidopsis thaliana |
AT1G48360:CDS:4.1 | 96 | Chr1: 17869518-17869613 | Arabidopsis thaliana |
AT1G48360:CDS:6.1 | 265 | Chr1: 17869716-17869980 | Arabidopsis thaliana |
AT1G48360:CDS:7.1 | 63 | Chr1: 17870080-17870142 | Arabidopsis thaliana |
AT1G48360:CDS:8.1 | 75 | Chr1: 17870604-17870678 | Arabidopsis thaliana |
AT1G48360:CDS:9.1 | 116 | Chr1: 17870775-17870890 | Arabidopsis thaliana |
AT1G48360:CDS:10.1 | 71 | Chr1: 17870989-17871059 | Arabidopsis thaliana |
AT1G48360:CDS:11.1 | 88 | Chr1: 17871160-17871247 | Arabidopsis thaliana |
AT1G48360:CDS:12.1 | 141 | Chr1: 17871319-17871459 | Arabidopsis thaliana |
AT1G48360:CDS:14.1 | 206 | Chr1: 17871533-17871738 | Arabidopsis thaliana |
AT1G48360:CDS:17.1 | 274 | Chr1: 17871824-17872097 | Arabidopsis thaliana |
AT1G48360:CDS:18 | 234 | Chr1: 17872185-17872418 | Arabidopsis thaliana |
AT1G48360:CDS:20 | 453 | Chr1: 17872494-17872946 | Arabidopsis thaliana |
AT1G48360:CDS:1.2 | 93 | Chr1: 17868661-17868753 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48355:exon:1 | 20 | Chr1: 17868517-17868536 | Arabidopsis thaliana |
AT1G48360:exon:23 | 1077 | Chr1: 17872185-17873261 | Arabidopsis thaliana |
AT1G48360:exon:1 | 232 | Chr1: 17868522-17868753 | Arabidopsis thaliana |
AT1G48360:exon:25 | 768 | Chr1: 17872494-17873261 | Arabidopsis thaliana |
AT1G48360:exon:15 | 420 | Chr1: 17871319-17871738 | Arabidopsis thaliana |
AT1G48360:exon:2 | 211 | Chr1: 17868543-17868753 | Arabidopsis thaliana |
AT1G48360:exon:17 | 565 | Chr1: 17871533-17872097 | Arabidopsis thaliana |
AT1G48360:exon:22 | 987 | Chr1: 17872185-17873171 | Arabidopsis thaliana |
AT1G48360:exon:3 | 393 | Chr1: 17868556-17868948 | Arabidopsis thaliana |
AT1G48360:exon:16 | 206 | Chr1: 17871533-17871738 | Arabidopsis thaliana |
AT1G48360:exon:20 | 234 | Chr1: 17872185-17872418 | Arabidopsis thaliana |
AT1G48360:exon:24 | 715 | Chr1: 17872494-17873208 | Arabidopsis thaliana |
AT1G48360:exon:4 | 104 | Chr1: 17868650-17868753 | Arabidopsis thaliana |
AT1G48360:exon:5 | 112 | Chr1: 17868837-17868948 | Arabidopsis thaliana |
AT1G48360:exon:6 | 389 | Chr1: 17869038-17869426 | Arabidopsis thaliana |
AT1G48360:exon:7 | 96 | Chr1: 17869518-17869613 | Arabidopsis thaliana |
AT1G48360:exon:8 | 265 | Chr1: 17869716-17869980 | Arabidopsis thaliana |
AT1G48360:exon:9 | 63 | Chr1: 17870080-17870142 | Arabidopsis thaliana |
AT1G48360:exon:10 | 75 | Chr1: 17870604-17870678 | Arabidopsis thaliana |
AT1G48360:exon:11 | 116 | Chr1: 17870775-17870890 | Arabidopsis thaliana |
AT1G48360:exon:12 | 71 | Chr1: 17870989-17871059 | Arabidopsis thaliana |
AT1G48360:exon:13 | 88 | Chr1: 17871160-17871247 | Arabidopsis thaliana |
AT1G48360:exon:14 | 141 | Chr1: 17871319-17871459 | Arabidopsis thaliana |
AT1G48360:exon:18 | 61 | Chr1: 17871678-17871738 | Arabidopsis thaliana |
AT1G48360:exon:19 | 274 | Chr1: 17871824-17872097 | Arabidopsis thaliana |
AT1G48360:exon:21 | 957 | Chr1: 17872185-17873141 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48355:five_prime_UTR:1 | 20 | Chr1: 17868517-17868536 | Arabidopsis thaliana |
AT1G48360:five_prime_UTR:1 | 139 | Chr1: 17868522-17868660 | Arabidopsis thaliana |
AT1G48360:five_prime_UTR:2 | 118 | Chr1: 17868543-17868660 | Arabidopsis thaliana |
AT1G48360:five_prime_UTR:3 | 393 | Chr1: 17868556-17868948 | Arabidopsis thaliana |
AT1G48360:five_prime_UTR:5 | 389 | Chr1: 17869038-17869426 | Arabidopsis thaliana |
AT1G48360:five_prime_UTR:6 | 21 | Chr1: 17869518-17869538 | Arabidopsis thaliana |
AT1G48360:five_prime_UTR:4 | 11 | Chr1: 17868650-17868660 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G48355 | AT1G48355 | 416 | Chr1: 17868121-17868536 | A. thaliana | hypothetical protein;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G48355.1 | 236 | Chr1: 17868121-17868536 |
AT1G48360.1 | 3205 | Chr1: 17868522-17873261 |
AT1G48360.2 | 3130 | Chr1: 17868522-17873261 |
AT1G48360.5 | 3167 | Chr1: 17868543-17873171 |
AT1G48360.4 | 3179 | Chr1: 17868543-17873171 |
AT1G48360.6 | 3126 | Chr1: 17868556-17873208 |
AT1G48360.3 | 2812 | Chr1: 17868650-17873141 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48360:three_prime_UTR:7 | 825 | Chr1: 17872437-17873261 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:9 | 315 | Chr1: 17872947-17873261 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:1 | 258 | Chr1: 17871481-17871738 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:3 | 295 | Chr1: 17871803-17872097 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:6 | 987 | Chr1: 17872185-17873171 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:8 | 262 | Chr1: 17872947-17873208 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:2 | 28 | Chr1: 17871711-17871738 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:4 | 274 | Chr1: 17871824-17872097 | Arabidopsis thaliana |
AT1G48360:three_prime_UTR:5 | 957 | Chr1: 17872185-17873141 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE59310 | 622 | Chr1: 17873230-17873851 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE59310:transposon_fragment:1 | 622 | Chr1: 17873230-17873851 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8AVS5_ARATH A0A1P8AVV1_ARATH A0A1P8AVS9_ARATH | function | Nuclease required for the repair of DNA interstrand cross-links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. |
FAN1_ARATH-3 FAN1_ARATH FAN1_ARATH-2 | function | Nuclease required for the repair of DNA interstrand cross-links (ICLs) (PubMed:25779053). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions (By similarity). May act upstream of the helicase RECQL4A and the ATPase RAD5A, which is involved in error-free post-replicative repair. Functions independently of MUS81 pathway, but in a similar pathway with RECQ4A, RAD5A and MFH1 in ICL repair (PubMed:25779053). |
FAN1_ARATH-3 A0A1P8AVS5_ARATH FAN1_ARATH FAN1_ARATH-2 A0A1P8AVV1_ARATH A0A1P8AVS9_ARATH | similarity | Belongs to the FAN1 family. |
FAN1_ARATH-3 FAN1_ARATH FAN1_ARATH-2 | subcellular location | Localizes to stalled replication forks via its UBZ-type zinc finger. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
nucleic acid binding | ECO |
zinc ion binding | ECO |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | ECO |
phosphodiesterase I activity | ECO |
biological process | |
homologous chromosome pairing at meiosis | ECO |
interstrand cross-link repair | ECO |
Interactions
Interaction Network
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Expression
Co-expression
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Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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