help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect

Gene : AT1G47370 A. thaliana

DB identifier  ? AT1G47370 Secondary Identifier  ? locus:2203776
Brief Description  Toll-Interleukin-Resistance (TIR) domain family protein
TAIR Computational Description  Toll-Interleukin-Resistance (TIR) domain family protein;(source:Araport11)
TAIR Curator Summary  RBA1 variant in Ag0 background is a TIR-only receptor protein that binds to the bacterial type III effector protein HopBA. The Col-0 variant, which is not expressed, is likely a psuedogene and more highly methylated than the Ag0 variant which is expressed.
TAIR Short Description  Toll-Interleukin-Resistance (TIR) domain family protein
TAIR Aliases  RBA1

1 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2806  
Location: Chr1:17365898-17368703 reverse strand

Gene models - AT1G47370 AT1G47370

? Gene models

Transcripts: 1  Exons: 7  Introns: 6 

Overlapping Features Displayer

8 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RBA1_ARATH function Disease resistance (R) protein that specifically recognizes the HopBA1 type III effector protein from P.syringae, and triggers cell death (PubMed:28137883). Acts as a NAD(+) hydrolase (NADase): in response to pathogen-recognition, catalyzes cleavage of NAD(+) into ADP-D-ribose (ADPR) and nicotinamide; NAD(+) cleavage triggering a defense system that promotes cell death (PubMed:31439793). In addition to ADPR, also generates a cyclization variant of cyclic ADPR (cADPR), termed v-cADPR, for which the cyclizing bond is unknown (PubMed:31439793). Also able to hydrolyze NADP(+), but not other NAD(+)-related molecules (PubMed:31439793).
RBA1_ARATH subcellular location Forms aggregate-like cyto-nucleoplasmic puncta.

1 Proteins

Function

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets