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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G47330:CDS:3 | 12 | Chr1: 17351508-17351519 | Arabidopsis thaliana |
AT1G47330:CDS:4 | 84 | Chr1: 17351603-17351686 | Arabidopsis thaliana |
AT1G47330:CDS:5 | 114 | Chr1: 17351779-17351892 | Arabidopsis thaliana |
AT1G47330:CDS:6 | 87 | Chr1: 17352011-17352097 | Arabidopsis thaliana |
AT1G47330:CDS:7 | 140 | Chr1: 17352252-17352391 | Arabidopsis thaliana |
AT1G47330:CDS:8 | 88 | Chr1: 17352495-17352582 | Arabidopsis thaliana |
AT1G47330:CDS:9 | 74 | Chr1: 17352660-17352733 | Arabidopsis thaliana |
AT1G47330:CDS:10 | 218 | Chr1: 17352825-17353042 | Arabidopsis thaliana |
AT1G47330:CDS:11 | 227 | Chr1: 17353123-17353349 | Arabidopsis thaliana |
AT1G47330:CDS:12 | 297 | Chr1: 17353443-17353739 | Arabidopsis thaliana |
AT1G47330:CDS:1 | 178 | Chr1: 17351149-17351326 | Arabidopsis thaliana |
AT1G47330:CDS:2 | 77 | Chr1: 17351443-17351519 | Arabidopsis thaliana |
AT1G47330:CDS:4.1 | 84 | Chr1: 17351603-17351686 | Arabidopsis thaliana |
AT1G47330:CDS:5.1 | 114 | Chr1: 17351779-17351892 | Arabidopsis thaliana |
AT1G47330:CDS:6.1 | 87 | Chr1: 17352011-17352097 | Arabidopsis thaliana |
AT1G47330:CDS:7.1 | 140 | Chr1: 17352252-17352391 | Arabidopsis thaliana |
AT1G47330:CDS:8.1 | 88 | Chr1: 17352495-17352582 | Arabidopsis thaliana |
AT1G47330:CDS:9.1 | 74 | Chr1: 17352660-17352733 | Arabidopsis thaliana |
AT1G47330:CDS:10.1 | 218 | Chr1: 17352825-17353042 | Arabidopsis thaliana |
AT1G47330:CDS:11.1 | 227 | Chr1: 17353123-17353349 | Arabidopsis thaliana |
AT1G47330:CDS:12.1 | 297 | Chr1: 17353443-17353739 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G47330:exon:1 | 309 | Chr1: 17351018-17351326 | Arabidopsis thaliana |
AT1G47330:exon:3 | 108 | Chr1: 17351412-17351519 | Arabidopsis thaliana |
AT1G47330:exon:2 | 305 | Chr1: 17351022-17351326 | Arabidopsis thaliana |
AT1G47330:exon:4 | 77 | Chr1: 17351443-17351519 | Arabidopsis thaliana |
AT1G47330:exon:5 | 84 | Chr1: 17351603-17351686 | Arabidopsis thaliana |
AT1G47330:exon:6 | 114 | Chr1: 17351779-17351892 | Arabidopsis thaliana |
AT1G47330:exon:7 | 87 | Chr1: 17352011-17352097 | Arabidopsis thaliana |
AT1G47330:exon:8 | 140 | Chr1: 17352252-17352391 | Arabidopsis thaliana |
AT1G47330:exon:9 | 88 | Chr1: 17352495-17352582 | Arabidopsis thaliana |
AT1G47330:exon:10 | 74 | Chr1: 17352660-17352733 | Arabidopsis thaliana |
AT1G47330:exon:11 | 218 | Chr1: 17352825-17353042 | Arabidopsis thaliana |
AT1G47330:exon:12 | 227 | Chr1: 17353123-17353349 | Arabidopsis thaliana |
AT1G47330:exon:13 | 433 | Chr1: 17353443-17353875 | Arabidopsis thaliana |
AT1G47340:exon:4 | 1583 | Chr1: 17353847-17355429 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G47330:five_prime_UTR:1 | 309 | Chr1: 17351018-17351326 | Arabidopsis thaliana |
AT1G47330:five_prime_UTR:3 | 96 | Chr1: 17351412-17351507 | Arabidopsis thaliana |
AT1G47330:five_prime_UTR:2 | 127 | Chr1: 17351022-17351148 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G47340 | locus:2203736 | AT1G47340 | 2718 | Chr1: 17353847-17356564 | A. thaliana | F-box and associated interaction domains-containing protein;(source:Araport11) | NULL | F-box and associated interaction domains-containing protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G47330.2 | 1882 | Chr1: 17351018-17353875 |
AT1G47330.1 | 1847 | Chr1: 17351022-17353875 |
AT1G47340.3 | 1618 | Chr1: 17353847-17356142 |
AT1G47340.2 | 1663 | Chr1: 17353847-17356397 |
AT1G47340.1 | 1726 | Chr1: 17353847-17356564 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G47330:three_prime_UTR:1 | 136 | Chr1: 17353740-17353875 | Arabidopsis thaliana |
AT1G47340:three_prime_UTR:1 | 276 | Chr1: 17353847-17354122 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
magnesium ion homeostasis | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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