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Genomics
Gene models -
Gene models
No results
Overlapping Features
Genome features that overlap coordinates of this TransposableElementGene
Exons: 12, Gene: 1, mRNA: 1, Transcript Regions: 6, Transposable Elements: 6, Transposon Fragments: 6
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G07203:exon:11 | 5305 | Chr1: 16637613-16642917 | Arabidopsis thaliana |
AT1G07203:exon:2 | 232 | Chr1: 16643238-16643469 | Arabidopsis thaliana |
AT1G07203:exon:12 | 2626 | Chr1: 16637613-16640238 | Arabidopsis thaliana |
AT1G07203:exon:4 | 3156 | Chr1: 16640314-16643469 | Arabidopsis thaliana |
AT1G07203:exon:6 | 4888 | Chr1: 16638582-16643469 | Arabidopsis thaliana |
AT1G07203:exon:10 | 1770 | Chr1: 16637789-16639558 | Arabidopsis thaliana |
AT1G07203:exon:5 | 3622 | Chr1: 16639848-16643469 | Arabidopsis thaliana |
AT1G07203:exon:7 | 4336 | Chr1: 16638582-16642917 | Arabidopsis thaliana |
AT1G07203:exon:3 | 228 | Chr1: 16643238-16643465 | Arabidopsis thaliana |
AT1G07203:exon:8 | 4393 | Chr1: 16637868-16642260 | Arabidopsis thaliana |
AT1G07203:exon:1 | 241 | Chr1: 16643238-16643478 | Arabidopsis thaliana |
AT1G43886:exon:1 | 6269 | Chr1: 16638997-16645265 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G07203 | AT1G07203 | 5866 | Chr1: 16637613-16643478 | A. thaliana | novel transcribed region; detected in root, carpel, root apical meristem, receptacle, leaf, dark-grown seedling, light-grown seedling, flower, aerial;(source:Araport11) | NULL |
Transcript Regions
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G07203.1 | 5537 | Chr1: 16637613-16643469 |
AT1G07203.2 | 5782 | Chr1: 16637613-16643469 |
AT1G07203.3 | 5478 | Chr1: 16637613-16643469 |
AT1G07203.6 | 5392 | Chr1: 16637789-16643469 |
AT1G07203.5 | 4899 | Chr1: 16637868-16643465 |
AT1G07203.4 | 4634 | Chr1: 16637868-16643478 |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE54825 | 241 | Chr1: 16638816-16639056 | Arabidopsis thaliana |
AT1TE54830 | 37 | Chr1: 16639057-16639093 | Arabidopsis thaliana |
AT1TE54835 | 1591 | Chr1: 16639094-16640684 | Arabidopsis thaliana |
AT1TE54840 | 82 | Chr1: 16640685-16640766 | Arabidopsis thaliana |
AT1TE54845 | 304 | Chr1: 16640767-16641070 | Arabidopsis thaliana |
AT1TE54850 | 393 | Chr1: 16641356-16641748 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE54825:transposon_fragment:1 | 241 | Chr1: 16638816-16639056 | Arabidopsis thaliana |
AT1TE54830:transposon_fragment:1 | 37 | Chr1: 16639057-16639093 | Arabidopsis thaliana |
AT1TE54835:transposon_fragment:1 | 1591 | Chr1: 16639094-16640684 | Arabidopsis thaliana |
AT1TE54840:transposon_fragment:1 | 82 | Chr1: 16640685-16640766 | Arabidopsis thaliana |
AT1TE54845:transposon_fragment:1 | 304 | Chr1: 16640767-16641070 | Arabidopsis thaliana |
AT1TE54850:transposon_fragment:1 | 393 | Chr1: 16641356-16641748 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...