help  | faq  | software  | BAR
Hide

Oops!

Error: 403

Gene : AT1G43770 A. thaliana

DB identifier  ? AT1G43770 Secondary Identifier  ? locus:2029147
Brief Description  RING/FYVE/PHD zinc finger superfamily protein
TAIR Computational Description  RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
TAIR Curator Summary  PHD finger-containing protein. Interacts with BDT1, acts with other PHD proteins to associate with flowering genes and thereby suppress their transcription.
TAIR Short Description  RING/FYVE/PHD zinc finger superfamily protein
TAIR Aliases  PHD1

0 Gene Rifs

1 Organism

5 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3493  
Location: Chr1:16548417-16551909

Gene models - AT1G43770 AT1G43770

? Gene models

Transcripts: 3  Exons: 18  Introns: 15 

Overlapping Features

? Genome features that overlap coordinates of this Gene

15 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PHD1_ARATH function Together with AIPP3/BDT1, cooperates to form a BAH-PHD bivalent histone reader complex able to read histone H3 lysine 27 trimethylation (H3K27me3) histone marks in order to regulate transcription, especially to prevent early flowering; promotes AIPP3/BDT1 binding to H3K27me3.

2 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
histone reader activity  ? ECO  
metal ion binding  ? ECO  
biological process
negative regulation of transcription elongation by RNA polymerase II  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets