External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 37, Exons: 37, Five Prime UTR: 1, mRNA: 1, Three Prime UTR: 1, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G42470:CDS:1 | 132 | Chr1: 15926987-15927118 | Arabidopsis thaliana |
AT1G42470:CDS:2 | 108 | Chr1: 15927216-15927323 | Arabidopsis thaliana |
AT1G42470:CDS:3 | 117 | Chr1: 15927415-15927531 | Arabidopsis thaliana |
AT1G42470:CDS:4 | 151 | Chr1: 15927615-15927765 | Arabidopsis thaliana |
AT1G42470:CDS:5 | 248 | Chr1: 15927851-15928098 | Arabidopsis thaliana |
AT1G42470:CDS:6 | 183 | Chr1: 15928186-15928368 | Arabidopsis thaliana |
AT1G42470:CDS:7 | 74 | Chr1: 15928457-15928530 | Arabidopsis thaliana |
AT1G42470:CDS:8 | 118 | Chr1: 15928606-15928723 | Arabidopsis thaliana |
AT1G42470:CDS:9 | 84 | Chr1: 15928817-15928900 | Arabidopsis thaliana |
AT1G42470:CDS:10 | 96 | Chr1: 15929045-15929140 | Arabidopsis thaliana |
AT1G42470:CDS:11 | 102 | Chr1: 15929226-15929327 | Arabidopsis thaliana |
AT1G42470:CDS:12 | 69 | Chr1: 15929426-15929494 | Arabidopsis thaliana |
AT1G42470:CDS:13 | 96 | Chr1: 15929632-15929727 | Arabidopsis thaliana |
AT1G42470:CDS:14 | 108 | Chr1: 15929814-15929921 | Arabidopsis thaliana |
AT1G42470:CDS:15 | 114 | Chr1: 15930005-15930118 | Arabidopsis thaliana |
AT1G42470:CDS:16 | 84 | Chr1: 15930233-15930316 | Arabidopsis thaliana |
AT1G42470:CDS:17 | 129 | Chr1: 15930424-15930552 | Arabidopsis thaliana |
AT1G42470:CDS:18 | 199 | Chr1: 15930674-15930872 | Arabidopsis thaliana |
AT1G42470:CDS:19 | 144 | Chr1: 15930951-15931094 | Arabidopsis thaliana |
AT1G42470:CDS:20 | 44 | Chr1: 15931194-15931237 | Arabidopsis thaliana |
AT1G42470:CDS:21 | 84 | Chr1: 15931351-15931434 | Arabidopsis thaliana |
AT1G42470:CDS:22 | 69 | Chr1: 15931534-15931602 | Arabidopsis thaliana |
AT1G42470:CDS:23 | 77 | Chr1: 15931678-15931754 | Arabidopsis thaliana |
AT1G42470:CDS:24 | 70 | Chr1: 15931831-15931900 | Arabidopsis thaliana |
AT1G42470:CDS:25 | 150 | Chr1: 15932101-15932250 | Arabidopsis thaliana |
AT1G42470:CDS:26 | 66 | Chr1: 15932999-15933064 | Arabidopsis thaliana |
AT1G42470:CDS:27 | 145 | Chr1: 15933159-15933303 | Arabidopsis thaliana |
AT1G42470:CDS:28 | 65 | Chr1: 15933408-15933472 | Arabidopsis thaliana |
AT1G42470:CDS:29 | 66 | Chr1: 15933567-15933632 | Arabidopsis thaliana |
AT1G42470:CDS:30 | 94 | Chr1: 15933742-15933835 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G42470:exon:1 | 443 | Chr1: 15926676-15927118 | Arabidopsis thaliana |
AT1G42470:exon:2 | 108 | Chr1: 15927216-15927323 | Arabidopsis thaliana |
AT1G42470:exon:3 | 117 | Chr1: 15927415-15927531 | Arabidopsis thaliana |
AT1G42470:exon:4 | 151 | Chr1: 15927615-15927765 | Arabidopsis thaliana |
AT1G42470:exon:5 | 248 | Chr1: 15927851-15928098 | Arabidopsis thaliana |
AT1G42470:exon:6 | 183 | Chr1: 15928186-15928368 | Arabidopsis thaliana |
AT1G42470:exon:7 | 74 | Chr1: 15928457-15928530 | Arabidopsis thaliana |
AT1G42470:exon:8 | 118 | Chr1: 15928606-15928723 | Arabidopsis thaliana |
AT1G42470:exon:9 | 84 | Chr1: 15928817-15928900 | Arabidopsis thaliana |
AT1G42470:exon:10 | 96 | Chr1: 15929045-15929140 | Arabidopsis thaliana |
AT1G42470:exon:11 | 102 | Chr1: 15929226-15929327 | Arabidopsis thaliana |
AT1G42470:exon:12 | 69 | Chr1: 15929426-15929494 | Arabidopsis thaliana |
AT1G42470:exon:13 | 96 | Chr1: 15929632-15929727 | Arabidopsis thaliana |
AT1G42470:exon:14 | 108 | Chr1: 15929814-15929921 | Arabidopsis thaliana |
AT1G42470:exon:15 | 114 | Chr1: 15930005-15930118 | Arabidopsis thaliana |
AT1G42470:exon:16 | 84 | Chr1: 15930233-15930316 | Arabidopsis thaliana |
AT1G42470:exon:17 | 129 | Chr1: 15930424-15930552 | Arabidopsis thaliana |
AT1G42470:exon:18 | 199 | Chr1: 15930674-15930872 | Arabidopsis thaliana |
AT1G42470:exon:19 | 144 | Chr1: 15930951-15931094 | Arabidopsis thaliana |
AT1G42470:exon:20 | 44 | Chr1: 15931194-15931237 | Arabidopsis thaliana |
AT1G42470:exon:21 | 84 | Chr1: 15931351-15931434 | Arabidopsis thaliana |
AT1G42470:exon:22 | 69 | Chr1: 15931534-15931602 | Arabidopsis thaliana |
AT1G42470:exon:23 | 77 | Chr1: 15931678-15931754 | Arabidopsis thaliana |
AT1G42470:exon:24 | 70 | Chr1: 15931831-15931900 | Arabidopsis thaliana |
AT1G42470:exon:25 | 150 | Chr1: 15932101-15932250 | Arabidopsis thaliana |
AT1G42470:exon:26 | 66 | Chr1: 15932999-15933064 | Arabidopsis thaliana |
AT1G42470:exon:27 | 145 | Chr1: 15933159-15933303 | Arabidopsis thaliana |
AT1G42470:exon:28 | 65 | Chr1: 15933408-15933472 | Arabidopsis thaliana |
AT1G42470:exon:29 | 66 | Chr1: 15933567-15933632 | Arabidopsis thaliana |
AT1G42470:exon:30 | 94 | Chr1: 15933742-15933835 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G42470:five_prime_UTR:1 | 311 | Chr1: 15926676-15926986 | Arabidopsis thaliana |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G42470:three_prime_UTR:1 | 439 | Chr1: 15935091-15935529 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE52495 | 123 | Chr1: 15926757-15926879 | Arabidopsis thaliana |
AT1TE52520 | 271 | Chr1: 15935440-15935710 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE52495:transposon_fragment:1 | 123 | Chr1: 15926757-15926879 | Arabidopsis thaliana |
AT1TE52520:transposon_fragment:1 | 271 | Chr1: 15935440-15935710 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4I9G5_ARATH | similarity | Belongs to the patched family. |
Function
Gene Ontology
cellular component | |
---|---|
plasmodesma | ECO |
membrane | ECO |
molecular function | |
lipid transporter activity | ECO |
biological process | |
pollen development | ECO |
regulation of sphingolipid biosynthetic process | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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