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Gene : TRM9 A. thaliana

DB identifier  ? AT1G31600 Secondary Identifier  ? locus:2028631
Name  ? tRNA methyltransferase 9 Brief Description  RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Computational Description  RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary  Dioxygenase involved in wobble uridine modifications.
TAIR Short Description  RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases  ALKBH8, AtALKBH8

1 Gene Rifs

1 Organism

6 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3622  
Location: Chr1:11312961-11316582 reverse strand

Gene models - TRM9 AT1G31600

? Gene models

Transcripts: 4  Exons: 30  Introns: 26 

Overlapping Features

? Genome features that overlap coordinates of this Gene

18 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ALKB8_ARATH-2 ALKB8_ARATH function Binds tRNA and catalyzes the iron and alpha-ketoglutarate dependent hydroxylation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA via its dioxygenase domain, giving rise to 5-(S)-methoxycarbonylhydroxymethyluridine.
F4I9F8_ARATH ALKB8_ARATH-2 ALKB8_ARATH similarity Belongs to the alkB family.

3 Proteins

Function

Gene Ontology

cellular component
No terms in this category.
molecular function
dioxygenase activity  ? ECO  
metal ion binding  ? ECO  
RNA binding  ? ECO  
biological process
demethylation  ? ECO  
tRNA wobble uridine modification  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets