External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 24, Exons: 14, Five Prime UTRs: 8, mRNAs: 4, Three Prime UTR: 1, Transposable Elements: 4, Transposon Fragments: 5
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G31600:CDS:8 | 63 | Chr1: 11313376-11313438 | Arabidopsis thaliana |
AT1G31600:CDS:7 | 66 | Chr1: 11313509-11313574 | Arabidopsis thaliana |
AT1G31600:CDS:6 | 273 | Chr1: 11313672-11313944 | Arabidopsis thaliana |
AT1G31600:CDS:5 | 216 | Chr1: 11314034-11314249 | Arabidopsis thaliana |
AT1G31600:CDS:3 | 102 | Chr1: 11314342-11314443 | Arabidopsis thaliana |
AT1G31600:CDS:1 | 576 | Chr1: 11314624-11315199 | Arabidopsis thaliana |
AT1G31600:CDS:8.1 | 63 | Chr1: 11313376-11313438 | Arabidopsis thaliana |
AT1G31600:CDS:7.1 | 66 | Chr1: 11313509-11313574 | Arabidopsis thaliana |
AT1G31600:CDS:6.1 | 273 | Chr1: 11313672-11313944 | Arabidopsis thaliana |
AT1G31600:CDS:5.1 | 216 | Chr1: 11314034-11314249 | Arabidopsis thaliana |
AT1G31600:CDS:4 | 96 | Chr1: 11314342-11314437 | Arabidopsis thaliana |
AT1G31600:CDS:2 | 321 | Chr1: 11314624-11314944 | Arabidopsis thaliana |
AT1G31600:CDS:8.2 | 63 | Chr1: 11313376-11313438 | Arabidopsis thaliana |
AT1G31600:CDS:7.2 | 66 | Chr1: 11313509-11313574 | Arabidopsis thaliana |
AT1G31600:CDS:6.2 | 273 | Chr1: 11313672-11313944 | Arabidopsis thaliana |
AT1G31600:CDS:5.2 | 216 | Chr1: 11314034-11314249 | Arabidopsis thaliana |
AT1G31600:CDS:3.1 | 102 | Chr1: 11314342-11314443 | Arabidopsis thaliana |
AT1G31600:CDS:2.1 | 321 | Chr1: 11314624-11314944 | Arabidopsis thaliana |
AT1G31600:CDS:8.3 | 63 | Chr1: 11313376-11313438 | Arabidopsis thaliana |
AT1G31600:CDS:7.3 | 66 | Chr1: 11313509-11313574 | Arabidopsis thaliana |
AT1G31600:CDS:6.3 | 273 | Chr1: 11313672-11313944 | Arabidopsis thaliana |
AT1G31600:CDS:5.3 | 216 | Chr1: 11314034-11314249 | Arabidopsis thaliana |
AT1G31600:CDS:3.2 | 102 | Chr1: 11314342-11314443 | Arabidopsis thaliana |
AT1G31600:CDS:1.1 | 576 | Chr1: 11314624-11315199 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G31600:exon:7 | 1010 | Chr1: 11314624-11315633 | Arabidopsis thaliana |
AT1G31600:exon:4 | 33 | Chr1: 11316403-11316435 | Arabidopsis thaliana |
AT1G31600:exon:10 | 96 | Chr1: 11314342-11314437 | Arabidopsis thaliana |
AT1G31600:exon:3 | 66 | Chr1: 11316403-11316468 | Arabidopsis thaliana |
AT1G31600:exon:8 | 371 | Chr1: 11314624-11314994 | Arabidopsis thaliana |
AT1G31600:exon:5 | 72 | Chr1: 11315569-11315640 | Arabidopsis thaliana |
AT1G31600:exon:2 | 122 | Chr1: 11316403-11316524 | Arabidopsis thaliana |
AT1G31600:exon:14 | 478 | Chr1: 11312961-11313438 | Arabidopsis thaliana |
AT1G31600:exon:13 | 66 | Chr1: 11313509-11313574 | Arabidopsis thaliana |
AT1G31600:exon:12 | 273 | Chr1: 11313672-11313944 | Arabidopsis thaliana |
AT1G31600:exon:11 | 216 | Chr1: 11314034-11314249 | Arabidopsis thaliana |
AT1G31600:exon:9 | 102 | Chr1: 11314342-11314443 | Arabidopsis thaliana |
AT1G31600:exon:6 | 1017 | Chr1: 11314624-11315640 | Arabidopsis thaliana |
AT1G31600:exon:1 | 180 | Chr1: 11316403-11316582 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G31600:five_prime_UTR:7 | 434 | Chr1: 11315200-11315633 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:4 | 33 | Chr1: 11316403-11316435 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:3 | 66 | Chr1: 11316403-11316468 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:8 | 50 | Chr1: 11314945-11314994 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:5 | 72 | Chr1: 11315569-11315640 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:2 | 122 | Chr1: 11316403-11316524 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:6 | 441 | Chr1: 11315200-11315640 | Arabidopsis thaliana |
AT1G31600:five_prime_UTR:1 | 180 | Chr1: 11316403-11316582 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G31600.3 | 2178 | Chr1: 11312961-11316435 |
AT1G31600.2 | 1638 | Chr1: 11312961-11316468 |
AT1G31600.4 | 1700 | Chr1: 11312961-11316524 |
AT1G31600.1 | 2332 | Chr1: 11312961-11316582 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G31600:three_prime_UTR:1 | 415 | Chr1: 11312961-11313375 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE36590 | 824 | Chr1: 11312254-11313077 | Arabidopsis thaliana |
AT1TE36595 | 86 | Chr1: 11313078-11313163 | Arabidopsis thaliana |
AT1TE36600 | 30 | Chr1: 11313164-11313193 | Arabidopsis thaliana |
AT1TE36605 | 1623 | Chr1: 11315041-11316663 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE36590:transposon_fragment:1 | 824 | Chr1: 11312254-11313077 | Arabidopsis thaliana |
AT1TE36595:transposon_fragment:1 | 86 | Chr1: 11313078-11313163 | Arabidopsis thaliana |
AT1TE36600:transposon_fragment:1 | 30 | Chr1: 11313164-11313193 | Arabidopsis thaliana |
AT1TE36605:transposon_fragment:2 | 178 | Chr1: 11315041-11315218 | Arabidopsis thaliana |
AT1TE36605:transposon_fragment:1 | 705 | Chr1: 11315959-11316663 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ALKB8_ARATH-2 ALKB8_ARATH | function | Binds tRNA and catalyzes the iron and alpha-ketoglutarate dependent hydroxylation of 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in tRNA via its dioxygenase domain, giving rise to 5-(S)-methoxycarbonylhydroxymethyluridine. |
F4I9F8_ARATH ALKB8_ARATH-2 ALKB8_ARATH | similarity | Belongs to the alkB family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
dioxygenase activity | ECO |
metal ion binding | ECO |
RNA binding | ECO |
biological process | |
demethylation | ECO |
tRNA wobble uridine modification | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...