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Gene : SGR2 A. thaliana

DB identifier  ? AT1G31480 Secondary Identifier  ? locus:2028641
Name  ? SHOOT GRAVITROPISM 2 Brief Description  shoot gravitropism 2 (SGR2)
TAIR Computational Description  shoot gravitropism 2 (SGR2);(source:Araport11)
TAIR Curator Summary  encodes a novel protein that may be part of a gene family represented by bovine phosphatidic acid-preferring phospholipase A1 (PA-PLA1)containing a putative transmembrane domain. SGR2 is involved in the formation and function of the vacuole.
TAIR Short Description  shoot gravitropism 2 (SGR2)
TAIR Aliases  SGR2

3 Gene Rifs

1 Organism

15 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5886  
Location: Chr1:11265816-11271701

Gene models - SGR2 AT1G31480

? Gene models

Transcripts: 1  Exons: 22  Introns: 21 

Overlapping Features

? Genome features that overlap coordinates of this Gene

23 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SHGR2_ARATH developmental stage Expressed in young seedlings and progressively confined in the elongation zone of the root during seedlings growth.
SHGR2_ARATH function Involved in vacuolar formation or function (e.g. formation of vacuolar membrane 'bulbs'). Required for amyloplast sedimentation in the endodermis during shoot gravitropism, which are thus acting as statoliths. Particularly important for the negative gravitropism leading to leaf movement observed in darkness.
SHGR2_ARATH subcellular location Detected in small organelles membranes.
SHGR2_ARATH tissue specificity Expressed in roots, hypocotyls, leaves, stems and floral buds, and, at low levels, in siliques.

1 Proteins

Function

Gene Ontology

cellular component
plasmodesma  ? ECO  
plant-type vacuole membrane  ? ECO  
vacuole  ? ECO  
molecular function
phospholipase A1 activity  ? ECO  
metal ion binding  ? ECO  
biological process
detection of gravity  ? ECO  
lipid catabolic process  ? ECO  
negative gravitropism  ? ECO  
amyloplast organization  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets