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Gene : NCED5 A. thaliana

DB identifier  ? AT1G30100 Secondary Identifier  ? locus:2202492
Name  ? nine-cis-epoxycarotenoid dioxygenase 5 Brief Description  nine-cis-epoxycarotenoid dioxygenase 5
TAIR Computational Description  nine-cis-epoxycarotenoid dioxygenase 5;(source:Araport11)
TAIR Curator Summary  Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
TAIR Short Description  nine-cis-epoxycarotenoid dioxygenase 5
TAIR Aliases  ATNCED5, NCED5

1 Gene Rifs

1 Organism

23 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2056  
Location: Chr1:10571310-10573365

Gene models - NCED5 AT1G30100

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
NCED5_ARATH developmental stage Expressed at later stages of seed maturation.
NCED5_ARATH function Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids (By similarity).
NCED5_ARATH similarity Belongs to the carotenoid oxygenase family.
NCED5_ARATH tissue specificity Detected only in seeds.

1 Proteins

Function

Gene Ontology

cellular component
thylakoid  ? ECO  
chloroplast thylakoid membrane  ? ECO  
molecular function
9-cis-epoxycarotenoid dioxygenase activity  ? ECO  
metal ion binding  ? ECO  
biological process
abscisic acid biosynthetic process  ? ECO  
response to water deprivation  ? ECO  
seed dormancy process  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets