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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 18, Exons: 12, Five Prime UTRs: 4, Gene: 1, mRNAs: 3, Three Prime UTR: 1, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28410:CDS:9 | 57 | Chr1: 9976596-9976652 | Arabidopsis thaliana |
AT1G28410:CDS:8 | 81 | Chr1: 9976751-9976831 | Arabidopsis thaliana |
AT1G28410:CDS:7 | 159 | Chr1: 9976918-9977076 | Arabidopsis thaliana |
AT1G28410:CDS:6 | 57 | Chr1: 9977194-9977250 | Arabidopsis thaliana |
AT1G28410:CDS:5 | 51 | Chr1: 9977366-9977416 | Arabidopsis thaliana |
AT1G28410:CDS:4 | 114 | Chr1: 9977857-9977970 | Arabidopsis thaliana |
AT1G28410:CDS:3 | 48 | Chr1: 9978121-9978168 | Arabidopsis thaliana |
AT1G28410:CDS:2 | 128 | Chr1: 9978688-9978815 | Arabidopsis thaliana |
AT1G28410:CDS:1 | 139 | Chr1: 9978942-9979080 | Arabidopsis thaliana |
AT1G28410:CDS:9.1 | 57 | Chr1: 9976596-9976652 | Arabidopsis thaliana |
AT1G28410:CDS:8.1 | 81 | Chr1: 9976751-9976831 | Arabidopsis thaliana |
AT1G28410:CDS:7.1 | 159 | Chr1: 9976918-9977076 | Arabidopsis thaliana |
AT1G28410:CDS:6.1 | 57 | Chr1: 9977194-9977250 | Arabidopsis thaliana |
AT1G28410:CDS:5.1 | 51 | Chr1: 9977366-9977416 | Arabidopsis thaliana |
AT1G28410:CDS:4.1 | 114 | Chr1: 9977857-9977970 | Arabidopsis thaliana |
AT1G28410:CDS:3.1 | 48 | Chr1: 9978121-9978168 | Arabidopsis thaliana |
AT1G28410:CDS:2.1 | 128 | Chr1: 9978688-9978815 | Arabidopsis thaliana |
AT1G28410:CDS:1.1 | 139 | Chr1: 9978942-9979080 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28410:exon:2 | 326 | Chr1: 9978942-9979267 | Arabidopsis thaliana |
AT1G28410:exon:11 | 471 | Chr1: 9976182-9976652 | Arabidopsis thaliana |
AT1G28410:exon:10 | 81 | Chr1: 9976751-9976831 | Arabidopsis thaliana |
AT1G28410:exon:9 | 159 | Chr1: 9976918-9977076 | Arabidopsis thaliana |
AT1G28410:exon:8 | 57 | Chr1: 9977194-9977250 | Arabidopsis thaliana |
AT1G28410:exon:7 | 51 | Chr1: 9977366-9977416 | Arabidopsis thaliana |
AT1G28410:exon:6 | 114 | Chr1: 9977857-9977970 | Arabidopsis thaliana |
AT1G28410:exon:5 | 48 | Chr1: 9978121-9978168 | Arabidopsis thaliana |
AT1G28410:exon:4 | 128 | Chr1: 9978688-9978815 | Arabidopsis thaliana |
AT1G28410:exon:3 | 262 | Chr1: 9978942-9979203 | Arabidopsis thaliana |
AT1G28410:exon:1 | 471 | Chr1: 9979323-9979793 | Arabidopsis thaliana |
AT1G28420:exon:1 | 636 | Chr1: 9979478-9980113 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28410:five_prime_UTR:2 | 187 | Chr1: 9979081-9979267 | Arabidopsis thaliana |
AT1G28410:five_prime_UTR:3 | 123 | Chr1: 9979081-9979203 | Arabidopsis thaliana |
AT1G28410:five_prime_UTR:1 | 471 | Chr1: 9979323-9979793 | Arabidopsis thaliana |
AT1G28420:five_prime_UTR:1 | 458 | Chr1: 9979478-9979935 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G28420 | locus:2032505 | HB-1 | homeobox-1 | 8260 | Chr1: 9979478-9987737 | A. thaliana | homeobox-1;(source:Araport11) | NULL | homeobox-1 | HB-1, RLT1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G28410.2 | 1435 | Chr1: 9976182-9979267 |
AT1G28410.1 | 1842 | Chr1: 9976182-9979793 |
AT1G28420.1 | 5853 | Chr1: 9979478-9987737 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28410:three_prime_UTR:1 | 414 | Chr1: 9976182-9976595 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE32180 | 189 | Chr1: 9979709-9979897 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE32180:transposon_fragment:1 | 189 | Chr1: 9979709-9979897 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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