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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28090:CDS:2 | 91 | Chr1: 9796045-9796135 | Arabidopsis thaliana |
AT1G28090:CDS:5 | 135 | Chr1: 9796246-9796380 | Arabidopsis thaliana |
AT1G28090:CDS:6 | 98 | Chr1: 9796626-9796723 | Arabidopsis thaliana |
AT1G28090:CDS:7 | 84 | Chr1: 9796836-9796919 | Arabidopsis thaliana |
AT1G28090:CDS:8 | 131 | Chr1: 9797034-9797164 | Arabidopsis thaliana |
AT1G28090:CDS:9 | 73 | Chr1: 9797257-9797329 | Arabidopsis thaliana |
AT1G28090:CDS:10 | 46 | Chr1: 9797426-9797471 | Arabidopsis thaliana |
AT1G28090:CDS:11 | 110 | Chr1: 9797569-9797678 | Arabidopsis thaliana |
AT1G28090:CDS:12 | 108 | Chr1: 9797776-9797883 | Arabidopsis thaliana |
AT1G28090:CDS:13 | 60 | Chr1: 9797975-9798034 | Arabidopsis thaliana |
AT1G28090:CDS:15 | 62 | Chr1: 9798142-9798203 | Arabidopsis thaliana |
AT1G28090:CDS:16 | 322 | Chr1: 9798282-9798603 | Arabidopsis thaliana |
AT1G28090:CDS:17 | 198 | Chr1: 9798694-9798891 | Arabidopsis thaliana |
AT1G28090:CDS:1 | 123 | Chr1: 9795826-9795948 | Arabidopsis thaliana |
AT1G28090:CDS:3 | 76 | Chr1: 9796060-9796135 | Arabidopsis thaliana |
AT1G28090:CDS:5.1 | 135 | Chr1: 9796246-9796380 | Arabidopsis thaliana |
AT1G28090:CDS:6.1 | 98 | Chr1: 9796626-9796723 | Arabidopsis thaliana |
AT1G28090:CDS:7.1 | 84 | Chr1: 9796836-9796919 | Arabidopsis thaliana |
AT1G28090:CDS:8.1 | 131 | Chr1: 9797034-9797164 | Arabidopsis thaliana |
AT1G28090:CDS:9.1 | 73 | Chr1: 9797257-9797329 | Arabidopsis thaliana |
AT1G28090:CDS:10.1 | 46 | Chr1: 9797426-9797471 | Arabidopsis thaliana |
AT1G28090:CDS:11.1 | 110 | Chr1: 9797569-9797678 | Arabidopsis thaliana |
AT1G28090:CDS:12.1 | 108 | Chr1: 9797776-9797883 | Arabidopsis thaliana |
AT1G28090:CDS:13.1 | 60 | Chr1: 9797975-9798034 | Arabidopsis thaliana |
AT1G28090:CDS:15.1 | 62 | Chr1: 9798142-9798203 | Arabidopsis thaliana |
AT1G28090:CDS:16.1 | 322 | Chr1: 9798282-9798603 | Arabidopsis thaliana |
AT1G28090:CDS:17.1 | 198 | Chr1: 9798694-9798891 | Arabidopsis thaliana |
AT1G28090:CDS:2.1 | 91 | Chr1: 9796045-9796135 | Arabidopsis thaliana |
AT1G28090:CDS:5.2 | 135 | Chr1: 9796246-9796380 | Arabidopsis thaliana |
AT1G28090:CDS:6.2 | 98 | Chr1: 9796626-9796723 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28090:exon:2 | 418 | Chr1: 9795718-9796135 | Arabidopsis thaliana |
AT1G28090:exon:21 | 389 | Chr1: 9798694-9799082 | Arabidopsis thaliana |
AT1G28090:exon:1 | 231 | Chr1: 9795718-9795948 | Arabidopsis thaliana |
AT1G28090:exon:22 | 411 | Chr1: 9798694-9799104 | Arabidopsis thaliana |
AT1G28090:exon:3 | 415 | Chr1: 9795721-9796135 | Arabidopsis thaliana |
AT1G28090:exon:20 | 373 | Chr1: 9798694-9799066 | Arabidopsis thaliana |
AT1G28090:exon:4 | 186 | Chr1: 9795763-9795948 | Arabidopsis thaliana |
AT1G28090:exon:5 | 76 | Chr1: 9796060-9796135 | Arabidopsis thaliana |
AT1G28090:exon:7 | 135 | Chr1: 9796246-9796380 | Arabidopsis thaliana |
AT1G28090:exon:16 | 229 | Chr1: 9797975-9798203 | Arabidopsis thaliana |
AT1G28090:exon:23 | 423 | Chr1: 9798694-9799116 | Arabidopsis thaliana |
AT1G28090:exon:6 | 228 | Chr1: 9796153-9796380 | Arabidopsis thaliana |
AT1G28090:exon:8 | 98 | Chr1: 9796626-9796723 | Arabidopsis thaliana |
AT1G28090:exon:9 | 84 | Chr1: 9796836-9796919 | Arabidopsis thaliana |
AT1G28090:exon:10 | 131 | Chr1: 9797034-9797164 | Arabidopsis thaliana |
AT1G28090:exon:11 | 73 | Chr1: 9797257-9797329 | Arabidopsis thaliana |
AT1G28090:exon:12 | 46 | Chr1: 9797426-9797471 | Arabidopsis thaliana |
AT1G28090:exon:13 | 110 | Chr1: 9797569-9797678 | Arabidopsis thaliana |
AT1G28090:exon:14 | 108 | Chr1: 9797776-9797883 | Arabidopsis thaliana |
AT1G28090:exon:15 | 60 | Chr1: 9797975-9798034 | Arabidopsis thaliana |
AT1G28090:exon:17 | 62 | Chr1: 9798142-9798203 | Arabidopsis thaliana |
AT1G28090:exon:18 | 322 | Chr1: 9798282-9798603 | Arabidopsis thaliana |
AT1G28090:exon:19 | 370 | Chr1: 9798694-9799063 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28090:five_prime_UTR:2 | 327 | Chr1: 9795718-9796044 | Arabidopsis thaliana |
AT1G28090:five_prime_UTR:1 | 108 | Chr1: 9795718-9795825 | Arabidopsis thaliana |
AT1G28090:five_prime_UTR:3 | 324 | Chr1: 9795721-9796044 | Arabidopsis thaliana |
AT1G28090:five_prime_UTR:4 | 63 | Chr1: 9795763-9795825 | Arabidopsis thaliana |
AT1G28090:five_prime_UTR:5 | 83 | Chr1: 9796153-9796235 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G28090.2 | 2036 | Chr1: 9795718-9799082 |
AT1G28090.1 | 1947 | Chr1: 9795718-9799104 |
AT1G28090.4 | 1957 | Chr1: 9795721-9799066 |
AT1G28090.5 | 2021 | Chr1: 9795763-9799116 |
AT1G28090.3 | 1692 | Chr1: 9796153-9799063 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G28090:three_prime_UTR:6 | 191 | Chr1: 9798892-9799082 | Arabidopsis thaliana |
AT1G28090:three_prime_UTR:7 | 213 | Chr1: 9798892-9799104 | Arabidopsis thaliana |
AT1G28090:three_prime_UTR:5 | 175 | Chr1: 9798892-9799066 | Arabidopsis thaliana |
AT1G28090:three_prime_UTR:1 | 100 | Chr1: 9798104-9798203 | Arabidopsis thaliana |
AT1G28090:three_prime_UTR:2 | 322 | Chr1: 9798282-9798603 | Arabidopsis thaliana |
AT1G28090:three_prime_UTR:3 | 423 | Chr1: 9798694-9799116 | Arabidopsis thaliana |
AT1G28090:three_prime_UTR:4 | 172 | Chr1: 9798892-9799063 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8ATK0_ARATH A0A1P8ATH4_ARATH A0A178W4S3_ARATH A8MQQ4_ARATH A0A178W431_ARATH | similarity | Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
nucleotide binding | ECO |
nucleotidyltransferase activity | ECO |
RNA binding | ECO |
biological process | |
tRNA 3'-terminal CCA addition | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...