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Gene : CAF2 A. thaliana

DB identifier  ? AT1G23400 Secondary Identifier  ? locus:2028100
Brief Description  RNA-binding CRS1 / YhbY (CRM) domain-containing protein
TAIR Computational Description  RNA-binding CRS1 / YhbY (CRM) domain-containing protein;(source:Araport11)
TAIR Curator Summary  Promotes the splicing of chloroplast group II introns.
TAIR Short Description  RNA-binding CRS1 / YhbY (CRM) domain-containing protein
TAIR Aliases  ATCAF2, CAF2

2 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3893  
Location: Chr1:8311984-8315876 reverse strand

Gene models - CAF2 AT1G23400

? Gene models

Transcripts: 1  Exons: 6  Introns: 5 

Overlapping Features Displayer

7 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CAF2P_ARATH function Essential protein required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles.

1 Proteins

Function

Gene Ontology

cellular component
ribonucleoprotein complex  ? ECO  
chloroplast stroma  ? ECO  
molecular function
mRNA binding  ? ECO  
biological process
mRNA processing  ? ECO  
Group II intron splicing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets