External Links
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- Plant Proteome Database
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22870:CDS:1 | 492 | Chr1: 8089501-8089992 | Arabidopsis thaliana |
AT1G22870:CDS:2 | 105 | Chr1: 8090062-8090166 | Arabidopsis thaliana |
AT1G22870:CDS:4 | 108 | Chr1: 8090246-8090353 | Arabidopsis thaliana |
AT1G22870:CDS:6 | 183 | Chr1: 8090460-8090642 | Arabidopsis thaliana |
AT1G22870:CDS:7 | 127 | Chr1: 8090767-8090893 | Arabidopsis thaliana |
AT1G22870:CDS:8 | 62 | Chr1: 8090994-8091055 | Arabidopsis thaliana |
AT1G22870:CDS:9 | 87 | Chr1: 8091152-8091238 | Arabidopsis thaliana |
AT1G22870:CDS:10 | 87 | Chr1: 8091349-8091435 | Arabidopsis thaliana |
AT1G22870:CDS:11 | 114 | Chr1: 8091741-8091854 | Arabidopsis thaliana |
AT1G22870:CDS:12 | 129 | Chr1: 8092288-8092416 | Arabidopsis thaliana |
AT1G22870:CDS:13 | 63 | Chr1: 8092611-8092673 | Arabidopsis thaliana |
AT1G22870:CDS:14 | 162 | Chr1: 8092780-8092941 | Arabidopsis thaliana |
AT1G22870:CDS:15 | 119 | Chr1: 8093039-8093157 | Arabidopsis thaliana |
AT1G22870:CDS:17 | 904 | Chr1: 8093270-8094173 | Arabidopsis thaliana |
AT1G22870:CDS:5 | 42 | Chr1: 8090316-8090357 | Arabidopsis thaliana |
AT1G22870:CDS:6.1 | 183 | Chr1: 8090460-8090642 | Arabidopsis thaliana |
AT1G22870:CDS:7.1 | 127 | Chr1: 8090767-8090893 | Arabidopsis thaliana |
AT1G22870:CDS:8.1 | 62 | Chr1: 8090994-8091055 | Arabidopsis thaliana |
AT1G22870:CDS:9.1 | 87 | Chr1: 8091152-8091238 | Arabidopsis thaliana |
AT1G22870:CDS:10.1 | 87 | Chr1: 8091349-8091435 | Arabidopsis thaliana |
AT1G22870:CDS:11.1 | 114 | Chr1: 8091741-8091854 | Arabidopsis thaliana |
AT1G22870:CDS:12.1 | 129 | Chr1: 8092288-8092416 | Arabidopsis thaliana |
AT1G22870:CDS:13.1 | 63 | Chr1: 8092611-8092673 | Arabidopsis thaliana |
AT1G22870:CDS:14.1 | 162 | Chr1: 8092780-8092941 | Arabidopsis thaliana |
AT1G22870:CDS:15.1 | 119 | Chr1: 8093039-8093157 | Arabidopsis thaliana |
AT1G22870:CDS:17.1 | 904 | Chr1: 8093270-8094173 | Arabidopsis thaliana |
AT1G22870:CDS:3 | 102 | Chr1: 8090065-8090166 | Arabidopsis thaliana |
AT1G22870:CDS:4.1 | 108 | Chr1: 8090246-8090353 | Arabidopsis thaliana |
AT1G22870:CDS:6.2 | 183 | Chr1: 8090460-8090642 | Arabidopsis thaliana |
AT1G22870:CDS:7.2 | 127 | Chr1: 8090767-8090893 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22860:exon:14 | 499 | Chr1: 8088775-8089273 | Arabidopsis thaliana |
AT1G22870:exon:1 | 726 | Chr1: 8089267-8089992 | Arabidopsis thaliana |
AT1G22870:exon:2 | 683 | Chr1: 8089310-8089992 | Arabidopsis thaliana |
AT1G22870:exon:7 | 112 | Chr1: 8090246-8090357 | Arabidopsis thaliana |
AT1G22870:exon:20 | 1236 | Chr1: 8093270-8094505 | Arabidopsis thaliana |
AT1G22870:exon:3 | 851 | Chr1: 8089316-8090166 | Arabidopsis thaliana |
AT1G22870:exon:19 | 1219 | Chr1: 8093270-8094488 | Arabidopsis thaliana |
AT1G22870:exon:4 | 672 | Chr1: 8089321-8089992 | Arabidopsis thaliana |
AT1G22870:exon:5 | 105 | Chr1: 8090062-8090166 | Arabidopsis thaliana |
AT1G22870:exon:6 | 108 | Chr1: 8090246-8090353 | Arabidopsis thaliana |
AT1G22870:exon:8 | 183 | Chr1: 8090460-8090642 | Arabidopsis thaliana |
AT1G22870:exon:9 | 127 | Chr1: 8090767-8090893 | Arabidopsis thaliana |
AT1G22870:exon:10 | 62 | Chr1: 8090994-8091055 | Arabidopsis thaliana |
AT1G22870:exon:11 | 87 | Chr1: 8091152-8091238 | Arabidopsis thaliana |
AT1G22870:exon:12 | 87 | Chr1: 8091349-8091435 | Arabidopsis thaliana |
AT1G22870:exon:13 | 114 | Chr1: 8091741-8091854 | Arabidopsis thaliana |
AT1G22870:exon:14 | 129 | Chr1: 8092288-8092416 | Arabidopsis thaliana |
AT1G22870:exon:15 | 63 | Chr1: 8092611-8092673 | Arabidopsis thaliana |
AT1G22870:exon:16 | 162 | Chr1: 8092780-8092941 | Arabidopsis thaliana |
AT1G22870:exon:17 | 119 | Chr1: 8093039-8093157 | Arabidopsis thaliana |
AT1G22870:exon:18 | 569 | Chr1: 8093270-8093838 | Arabidopsis thaliana |
AT1G22870:exon:21 | 527 | Chr1: 8093931-8094457 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22870:five_prime_UTR:1 | 234 | Chr1: 8089267-8089500 | Arabidopsis thaliana |
AT1G22870:five_prime_UTR:2 | 683 | Chr1: 8089310-8089992 | Arabidopsis thaliana |
AT1G22870:five_prime_UTR:5 | 105 | Chr1: 8090062-8090166 | Arabidopsis thaliana |
AT1G22870:five_prime_UTR:6 | 70 | Chr1: 8090246-8090315 | Arabidopsis thaliana |
AT1G22870:five_prime_UTR:3 | 749 | Chr1: 8089316-8090064 | Arabidopsis thaliana |
AT1G22870:five_prime_UTR:4 | 180 | Chr1: 8089321-8089500 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G22860 | locus:2017714 | AT1G22860 | 6090 | Chr1: 8083184-8089273 | A. thaliana | Vacuolar sorting protein 39;(source:Araport11) | NULL | Vacuolar sorting protein 39 | MTV10, VPS3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G22860.1 | 3577 | Chr1: 8083184-8089273 |
AT1G22870.1 | 3308 | Chr1: 8089267-8094505 |
AT1G22870.2 | 3269 | Chr1: 8089310-8094505 |
AT1G22870.3 | 3311 | Chr1: 8089316-8094488 |
AT1G22870.4 | 3114 | Chr1: 8089321-8094457 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22860:three_prime_UTR:1 | 406 | Chr1: 8088868-8089273 | Arabidopsis thaliana |
AT1G22870:three_prime_UTR:3 | 332 | Chr1: 8094174-8094505 | Arabidopsis thaliana |
AT1G22870:three_prime_UTR:2 | 315 | Chr1: 8094174-8094488 | Arabidopsis thaliana |
AT1G22870:three_prime_UTR:1 | 480 | Chr1: 8093978-8094457 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SCY2A_ARATH | developmental stage | Mainly expressed in leaf mesophyll cells, and, at low levels, in root vascular tissues. |
SCY2A_ARATH | function | Probably inactive kinase (PubMed:28751315). Component of the AP2-containing clathrin coat that regulates clathrin-dependent trafficking at plasma membrane, TGN and endosomal system (PubMed:28751315). Together with SCYL2B, required for cell growth, plant growth and development (PubMed:28751315). |
SCY2A_ARATH | similarity | Belongs to the protein kinase superfamily. |
SCY2A_ARATH | subcellular location | Colocalizes with the clathrin heavy chain 1 (CHC1). |
SCY2A_ARATH | tissue specificity | Expressed in roots, seedlings, leaves, stems, flowers, and, at low levels, in siliques. |
Function
Gene Ontology
cellular component | |
---|---|
late endosome membrane | ECO |
trans-Golgi network membrane | ECO |
Golgi membrane | ECO |
molecular function | |
ATP binding | ECO |
protein kinase activity | ECO |
clathrin heavy chain binding | ECO |
biological process | |
protein phosphorylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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