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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22660:CDS:1 | 375 | Chr1: 8017395-8017769 | Arabidopsis thaliana |
AT1G22660:CDS:3 | 131 | Chr1: 8017869-8017999 | Arabidopsis thaliana |
AT1G22660:CDS:4 | 118 | Chr1: 8018085-8018202 | Arabidopsis thaliana |
AT1G22660:CDS:5 | 53 | Chr1: 8018358-8018410 | Arabidopsis thaliana |
AT1G22660:CDS:6 | 50 | Chr1: 8018517-8018566 | Arabidopsis thaliana |
AT1G22660:CDS:7 | 99 | Chr1: 8018648-8018746 | Arabidopsis thaliana |
AT1G22660:CDS:8 | 110 | Chr1: 8018873-8018982 | Arabidopsis thaliana |
AT1G22660:CDS:9 | 128 | Chr1: 8019073-8019200 | Arabidopsis thaliana |
AT1G22660:CDS:10 | 67 | Chr1: 8019306-8019372 | Arabidopsis thaliana |
AT1G22660:CDS:11 | 84 | Chr1: 8019484-8019567 | Arabidopsis thaliana |
AT1G22660:CDS:12 | 63 | Chr1: 8019662-8019724 | Arabidopsis thaliana |
AT1G22660:CDS:13 | 178 | Chr1: 8019983-8020160 | Arabidopsis thaliana |
AT1G22660:CDS:15 | 185 | Chr1: 8020367-8020551 | Arabidopsis thaliana |
AT1G22660:CDS:1.1 | 375 | Chr1: 8017395-8017769 | Arabidopsis thaliana |
AT1G22660:CDS:3.1 | 131 | Chr1: 8017869-8017999 | Arabidopsis thaliana |
AT1G22660:CDS:4.1 | 118 | Chr1: 8018085-8018202 | Arabidopsis thaliana |
AT1G22660:CDS:5.1 | 53 | Chr1: 8018358-8018410 | Arabidopsis thaliana |
AT1G22660:CDS:6.1 | 50 | Chr1: 8018517-8018566 | Arabidopsis thaliana |
AT1G22660:CDS:7.1 | 99 | Chr1: 8018648-8018746 | Arabidopsis thaliana |
AT1G22660:CDS:8.1 | 110 | Chr1: 8018873-8018982 | Arabidopsis thaliana |
AT1G22660:CDS:9.1 | 128 | Chr1: 8019073-8019200 | Arabidopsis thaliana |
AT1G22660:CDS:10.1 | 67 | Chr1: 8019306-8019372 | Arabidopsis thaliana |
AT1G22660:CDS:11.1 | 84 | Chr1: 8019484-8019567 | Arabidopsis thaliana |
AT1G22660:CDS:12.1 | 63 | Chr1: 8019662-8019724 | Arabidopsis thaliana |
AT1G22660:CDS:13.1 | 178 | Chr1: 8019983-8020160 | Arabidopsis thaliana |
AT1G22660:CDS:14 | 174 | Chr1: 8020367-8020540 | Arabidopsis thaliana |
AT1G22660:CDS:16 | 98 | Chr1: 8020884-8020981 | Arabidopsis thaliana |
AT1G22660:CDS:17 | 105 | Chr1: 8021434-8021538 | Arabidopsis thaliana |
AT1G22660:CDS:2 | 360 | Chr1: 8017410-8017769 | Arabidopsis thaliana |
AT1G22660:CDS:3.2 | 131 | Chr1: 8017869-8017999 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22660:exon:1 | 489 | Chr1: 8017281-8017769 | Arabidopsis thaliana |
AT1G22660:exon:17 | 615 | Chr1: 8020367-8020981 | Arabidopsis thaliana |
AT1G22660:exon:2 | 387 | Chr1: 8017383-8017769 | Arabidopsis thaliana |
AT1G22660:exon:20 | 497 | Chr1: 8021434-8021930 | Arabidopsis thaliana |
AT1G22660:exon:16 | 204 | Chr1: 8020367-8020570 | Arabidopsis thaliana |
AT1G22660:exon:21 | 154 | Chr1: 8021440-8021593 | Arabidopsis thaliana |
AT1G22660:exon:3 | 373 | Chr1: 8017397-8017769 | Arabidopsis thaliana |
AT1G22660:exon:4 | 131 | Chr1: 8017869-8017999 | Arabidopsis thaliana |
AT1G22660:exon:5 | 118 | Chr1: 8018085-8018202 | Arabidopsis thaliana |
AT1G22660:exon:6 | 53 | Chr1: 8018358-8018410 | Arabidopsis thaliana |
AT1G22660:exon:7 | 50 | Chr1: 8018517-8018566 | Arabidopsis thaliana |
AT1G22660:exon:8 | 99 | Chr1: 8018648-8018746 | Arabidopsis thaliana |
AT1G22660:exon:9 | 110 | Chr1: 8018873-8018982 | Arabidopsis thaliana |
AT1G22660:exon:10 | 128 | Chr1: 8019073-8019200 | Arabidopsis thaliana |
AT1G22660:exon:11 | 67 | Chr1: 8019306-8019372 | Arabidopsis thaliana |
AT1G22660:exon:12 | 84 | Chr1: 8019484-8019567 | Arabidopsis thaliana |
AT1G22660:exon:13 | 63 | Chr1: 8019662-8019724 | Arabidopsis thaliana |
AT1G22660:exon:14 | 178 | Chr1: 8019983-8020160 | Arabidopsis thaliana |
AT1G22660:exon:15 | 174 | Chr1: 8020367-8020540 | Arabidopsis thaliana |
AT1G22660:exon:18 | 98 | Chr1: 8020884-8020981 | Arabidopsis thaliana |
AT1G22660:exon:19 | 282 | Chr1: 8021434-8021715 | Arabidopsis thaliana |
AT1G22670:exon:4 | 531 | Chr1: 8021835-8022365 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22660:five_prime_UTR:1 | 114 | Chr1: 8017281-8017394 | Arabidopsis thaliana |
AT1G22660:five_prime_UTR:2 | 12 | Chr1: 8017383-8017394 | Arabidopsis thaliana |
AT1G22660:five_prime_UTR:3 | 13 | Chr1: 8017397-8017409 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G22670 | locus:2199665 | AT1G22670 | 1682 | Chr1: 8021835-8023516 | A. thaliana | Protease-associated (PA) RING/U-box zinc finger family protein;(source:Araport11) | NULL | Protease-associated (PA) RING/U-box zinc finger family protein | RMR3 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G22660.3 | 2467 | Chr1: 8017281-8021715 |
AT1G22660.4 | 2237 | Chr1: 8017383-8021930 |
AT1G22660.5 | 1658 | Chr1: 8017397-8020570 |
AT1G22660.2 | 1880 | Chr1: 8017397-8021593 |
AT1G22660.1 | 2008 | Chr1: 8017397-8021715 |
AT1G22670.1 | 1288 | Chr1: 8021835-8023516 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G22660:three_prime_UTR:2 | 430 | Chr1: 8020552-8020981 | Arabidopsis thaliana |
AT1G22660:three_prime_UTR:3 | 282 | Chr1: 8021434-8021715 | Arabidopsis thaliana |
AT1G22660:three_prime_UTR:6 | 392 | Chr1: 8021539-8021930 | Arabidopsis thaliana |
AT1G22660:three_prime_UTR:1 | 19 | Chr1: 8020552-8020570 | Arabidopsis thaliana |
AT1G22660:three_prime_UTR:4 | 55 | Chr1: 8021539-8021593 | Arabidopsis thaliana |
AT1G22660:three_prime_UTR:5 | 177 | Chr1: 8021539-8021715 | Arabidopsis thaliana |
AT1G22670:three_prime_UTR:1 | 19 | Chr1: 8021835-8021853 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
Q94K06_ARATH F4I2Y2_ARATH A0A1P8AU92_ARATH A0A1P8AU61_ARATH A0A1P8AU79_ARATH | similarity | Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
CTP:tRNA cytidylyltransferase activity | ECO |
ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity | ECO |
RNA binding | ECO |
biological process | |
tRNA 3'-terminal CCA addition | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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