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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21400:CDS:3 | 9 | Chr1: 7494169-7494177 | Arabidopsis thaliana |
AT1G21400:CDS:4 | 138 | Chr1: 7494444-7494581 | Arabidopsis thaliana |
AT1G21400:CDS:6 | 183 | Chr1: 7494663-7494845 | Arabidopsis thaliana |
AT1G21400:CDS:7 | 158 | Chr1: 7494923-7495080 | Arabidopsis thaliana |
AT1G21400:CDS:8 | 100 | Chr1: 7495167-7495266 | Arabidopsis thaliana |
AT1G21400:CDS:9 | 112 | Chr1: 7495366-7495477 | Arabidopsis thaliana |
AT1G21400:CDS:11 | 140 | Chr1: 7495572-7495711 | Arabidopsis thaliana |
AT1G21400:CDS:12 | 186 | Chr1: 7495801-7495986 | Arabidopsis thaliana |
AT1G21400:CDS:13 | 168 | Chr1: 7496073-7496240 | Arabidopsis thaliana |
AT1G21400:CDS:5 | 96 | Chr1: 7494486-7494581 | Arabidopsis thaliana |
AT1G21400:CDS:6.1 | 183 | Chr1: 7494663-7494845 | Arabidopsis thaliana |
AT1G21400:CDS:7.1 | 158 | Chr1: 7494923-7495080 | Arabidopsis thaliana |
AT1G21400:CDS:8.1 | 100 | Chr1: 7495167-7495266 | Arabidopsis thaliana |
AT1G21400:CDS:9.1 | 112 | Chr1: 7495366-7495477 | Arabidopsis thaliana |
AT1G21400:CDS:11.1 | 140 | Chr1: 7495572-7495711 | Arabidopsis thaliana |
AT1G21400:CDS:12.1 | 186 | Chr1: 7495801-7495986 | Arabidopsis thaliana |
AT1G21400:CDS:13.1 | 168 | Chr1: 7496073-7496240 | Arabidopsis thaliana |
AT1G21400:CDS:1 | 390 | Chr1: 7493336-7493725 | Arabidopsis thaliana |
AT1G21400:CDS:4.1 | 138 | Chr1: 7494444-7494581 | Arabidopsis thaliana |
AT1G21400:CDS:6.2 | 183 | Chr1: 7494663-7494845 | Arabidopsis thaliana |
AT1G21400:CDS:7.2 | 158 | Chr1: 7494923-7495080 | Arabidopsis thaliana |
AT1G21400:CDS:8.2 | 100 | Chr1: 7495167-7495266 | Arabidopsis thaliana |
AT1G21400:CDS:9.2 | 112 | Chr1: 7495366-7495477 | Arabidopsis thaliana |
AT1G21400:CDS:11.2 | 140 | Chr1: 7495572-7495711 | Arabidopsis thaliana |
AT1G21400:CDS:12.2 | 186 | Chr1: 7495801-7495986 | Arabidopsis thaliana |
AT1G21400:CDS:13.2 | 168 | Chr1: 7496073-7496240 | Arabidopsis thaliana |
AT1G21400:CDS:5.1 | 96 | Chr1: 7494486-7494581 | Arabidopsis thaliana |
AT1G21400:CDS:6.3 | 183 | Chr1: 7494663-7494845 | Arabidopsis thaliana |
AT1G21400:CDS:7.3 | 158 | Chr1: 7494923-7495080 | Arabidopsis thaliana |
AT1G21400:CDS:8.3 | 100 | Chr1: 7495167-7495266 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21400:exon:2 | 965 | Chr1: 7493213-7494177 | Arabidopsis thaliana |
AT1G21400:exon:3 | 1070 | Chr1: 7493213-7494282 | Arabidopsis thaliana |
AT1G21400:exon:1 | 513 | Chr1: 7493213-7493725 | Arabidopsis thaliana |
AT1G21400:exon:6 | 448 | Chr1: 7494134-7494581 | Arabidopsis thaliana |
AT1G21400:exon:16 | 669 | Chr1: 7496073-7496741 | Arabidopsis thaliana |
AT1G21400:exon:4 | 407 | Chr1: 7493319-7493725 | Arabidopsis thaliana |
AT1G21400:exon:12 | 346 | Chr1: 7495366-7495711 | Arabidopsis thaliana |
AT1G21400:exon:5 | 383 | Chr1: 7493343-7493725 | Arabidopsis thaliana |
AT1G21400:exon:7 | 138 | Chr1: 7494444-7494581 | Arabidopsis thaliana |
AT1G21400:exon:8 | 183 | Chr1: 7494663-7494845 | Arabidopsis thaliana |
AT1G21400:exon:9 | 158 | Chr1: 7494923-7495080 | Arabidopsis thaliana |
AT1G21400:exon:10 | 100 | Chr1: 7495167-7495266 | Arabidopsis thaliana |
AT1G21400:exon:11 | 112 | Chr1: 7495366-7495477 | Arabidopsis thaliana |
AT1G21400:exon:13 | 140 | Chr1: 7495572-7495711 | Arabidopsis thaliana |
AT1G21400:exon:14 | 186 | Chr1: 7495801-7495986 | Arabidopsis thaliana |
AT1G21400:exon:15 | 638 | Chr1: 7496073-7496710 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21400:five_prime_UTR:3 | 956 | Chr1: 7493213-7494168 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:4 | 1070 | Chr1: 7493213-7494282 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:8 | 42 | Chr1: 7494444-7494485 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:1 | 123 | Chr1: 7493213-7493335 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:2 | 513 | Chr1: 7493213-7493725 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:7 | 352 | Chr1: 7494134-7494485 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:5 | 17 | Chr1: 7493319-7493335 | Arabidopsis thaliana |
AT1G21400:five_prime_UTR:6 | 149 | Chr1: 7493343-7493491 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G21400.3 | 2651 | Chr1: 7493213-7496741 |
AT1G21400.2 | 2756 | Chr1: 7493213-7496741 |
AT1G21400.5 | 2199 | Chr1: 7493213-7496741 |
AT1G21400.4 | 2509 | Chr1: 7493213-7496741 |
AT1G21400.6 | 2156 | Chr1: 7493319-7496710 |
AT1G21400.1 | 2038 | Chr1: 7493343-7496710 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21400:three_prime_UTR:5 | 501 | Chr1: 7496241-7496741 | Arabidopsis thaliana |
AT1G21400:three_prime_UTR:1 | 217 | Chr1: 7495495-7495711 | Arabidopsis thaliana |
AT1G21400:three_prime_UTR:2 | 186 | Chr1: 7495801-7495986 | Arabidopsis thaliana |
AT1G21400:three_prime_UTR:3 | 638 | Chr1: 7496073-7496710 | Arabidopsis thaliana |
AT1G21400:three_prime_UTR:4 | 470 | Chr1: 7496241-7496710 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ODBA1_ARATH | function | The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). Required during sugar starvation. |
ODBA1_ARATH | similarity | Belongs to the BCKDHA family. |
Function
Gene Ontology
cellular component | |
---|---|
mitochondrial matrix | ECO |
molecular function | |
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | ECO |
metal ion binding | ECO |
biological process | |
branched-chain amino acid catabolic process | ECO |
cellular response to sucrose starvation | ECO |
response to sucrose | ECO |
response to absence of light | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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