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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21170:CDS:1 | 420 | Chr1: 7413050-7413469 | Arabidopsis thaliana |
AT1G21170:CDS:2 | 158 | Chr1: 7413798-7413955 | Arabidopsis thaliana |
AT1G21170:CDS:3 | 86 | Chr1: 7414070-7414155 | Arabidopsis thaliana |
AT1G21170:CDS:4 | 195 | Chr1: 7414271-7414465 | Arabidopsis thaliana |
AT1G21170:CDS:5 | 128 | Chr1: 7414549-7414676 | Arabidopsis thaliana |
AT1G21170:CDS:6 | 159 | Chr1: 7414762-7414920 | Arabidopsis thaliana |
AT1G21170:CDS:7 | 105 | Chr1: 7415054-7415158 | Arabidopsis thaliana |
AT1G21170:CDS:8 | 75 | Chr1: 7415419-7415493 | Arabidopsis thaliana |
AT1G21170:CDS:9 | 138 | Chr1: 7415735-7415872 | Arabidopsis thaliana |
AT1G21170:CDS:11 | 186 | Chr1: 7415969-7416154 | Arabidopsis thaliana |
AT1G21170:CDS:13 | 129 | Chr1: 7416243-7416371 | Arabidopsis thaliana |
AT1G21170:CDS:14 | 127 | Chr1: 7416507-7416633 | Arabidopsis thaliana |
AT1G21170:CDS:15 | 211 | Chr1: 7416714-7416924 | Arabidopsis thaliana |
AT1G21170:CDS:16 | 116 | Chr1: 7417310-7417425 | Arabidopsis thaliana |
AT1G21170:CDS:17 | 229 | Chr1: 7417543-7417771 | Arabidopsis thaliana |
AT1G21170:CDS:18 | 94 | Chr1: 7418030-7418123 | Arabidopsis thaliana |
AT1G21170:CDS:19 | 78 | Chr1: 7418266-7418343 | Arabidopsis thaliana |
AT1G21170:CDS:20 | 57 | Chr1: 7418456-7418512 | Arabidopsis thaliana |
AT1G21170:CDS:21 | 150 | Chr1: 7418624-7418773 | Arabidopsis thaliana |
AT1G21170:CDS:22 | 216 | Chr1: 7418870-7419085 | Arabidopsis thaliana |
AT1G21170:CDS:23 | 216 | Chr1: 7419196-7419411 | Arabidopsis thaliana |
AT1G21170:CDS:1.1 | 420 | Chr1: 7413050-7413469 | Arabidopsis thaliana |
AT1G21170:CDS:2.1 | 158 | Chr1: 7413798-7413955 | Arabidopsis thaliana |
AT1G21170:CDS:3.1 | 86 | Chr1: 7414070-7414155 | Arabidopsis thaliana |
AT1G21170:CDS:4.1 | 195 | Chr1: 7414271-7414465 | Arabidopsis thaliana |
AT1G21170:CDS:5.1 | 128 | Chr1: 7414549-7414676 | Arabidopsis thaliana |
AT1G21170:CDS:6.1 | 159 | Chr1: 7414762-7414920 | Arabidopsis thaliana |
AT1G21170:CDS:7.1 | 105 | Chr1: 7415054-7415158 | Arabidopsis thaliana |
AT1G21170:CDS:8.1 | 75 | Chr1: 7415419-7415493 | Arabidopsis thaliana |
AT1G21170:CDS:10 | 190 | Chr1: 7415735-7415924 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21160:exon:1 | 691 | Chr1: 7412605-7413295 | Arabidopsis thaliana |
AT1G21170:exon:1 | 640 | Chr1: 7412830-7413469 | Arabidopsis thaliana |
AT1G21170:exon:10 | 138 | Chr1: 7415735-7415872 | Arabidopsis thaliana |
AT1G21170:exon:12 | 186 | Chr1: 7415969-7416154 | Arabidopsis thaliana |
AT1G21170:exon:2 | 420 | Chr1: 7413050-7413469 | Arabidopsis thaliana |
AT1G21170:exon:3 | 158 | Chr1: 7413798-7413955 | Arabidopsis thaliana |
AT1G21170:exon:4 | 86 | Chr1: 7414070-7414155 | Arabidopsis thaliana |
AT1G21170:exon:5 | 195 | Chr1: 7414271-7414465 | Arabidopsis thaliana |
AT1G21170:exon:6 | 128 | Chr1: 7414549-7414676 | Arabidopsis thaliana |
AT1G21170:exon:7 | 159 | Chr1: 7414762-7414920 | Arabidopsis thaliana |
AT1G21170:exon:8 | 105 | Chr1: 7415054-7415158 | Arabidopsis thaliana |
AT1G21170:exon:9 | 75 | Chr1: 7415419-7415493 | Arabidopsis thaliana |
AT1G21170:exon:11 | 190 | Chr1: 7415735-7415924 | Arabidopsis thaliana |
AT1G21170:exon:13 | 161 | Chr1: 7415994-7416154 | Arabidopsis thaliana |
AT1G21170:exon:14 | 129 | Chr1: 7416243-7416371 | Arabidopsis thaliana |
AT1G21170:exon:15 | 127 | Chr1: 7416507-7416633 | Arabidopsis thaliana |
AT1G21170:exon:16 | 211 | Chr1: 7416714-7416924 | Arabidopsis thaliana |
AT1G21170:exon:17 | 116 | Chr1: 7417310-7417425 | Arabidopsis thaliana |
AT1G21170:exon:18 | 229 | Chr1: 7417543-7417771 | Arabidopsis thaliana |
AT1G21170:exon:19 | 94 | Chr1: 7418030-7418123 | Arabidopsis thaliana |
AT1G21170:exon:20 | 78 | Chr1: 7418266-7418343 | Arabidopsis thaliana |
AT1G21170:exon:21 | 57 | Chr1: 7418456-7418512 | Arabidopsis thaliana |
AT1G21170:exon:22 | 150 | Chr1: 7418624-7418773 | Arabidopsis thaliana |
AT1G21170:exon:23 | 216 | Chr1: 7418870-7419085 | Arabidopsis thaliana |
AT1G21170:exon:24 | 448 | Chr1: 7419196-7419643 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21160:five_prime_UTR:1 | 691 | Chr1: 7412605-7413295 | Arabidopsis thaliana |
AT1G21170:five_prime_UTR:1 | 220 | Chr1: 7412830-7413049 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G21160 | locus:2199562 | AT1G21160 | 5365 | Chr1: 7407931-7413295 | A. thaliana | eukaryotic translation initiation factor 2 (eIF-2) family protein;(source:Araport11) | NULL | eukaryotic translation initiation factor 2 (eIF-2) family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G21160.1 | 4186 | Chr1: 7407931-7413295 |
AT1G21170.1 | 3725 | Chr1: 7412830-7419643 |
AT1G21170.2 | 3532 | Chr1: 7413050-7419643 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G21170:three_prime_UTR:1 | 232 | Chr1: 7419412-7419643 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A1P8AUR0_ARATH | function | Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. |
SEC5B_ARATH | function | Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. Involved in polarized cell growth and organ morphogenesis. During cytokinesis, involved in cell plate initiation, cell plate maturation and formation of new primary cell wall. |
SEC5B_ARATH A0A1P8AUR0_ARATH | similarity | Belongs to the SEC5 family. |
Function
Gene Ontology
cellular component | |
---|---|
exocyst | ECO |
molecular function | |
No terms in this category. | |
biological process | |
exocytosis | ECO |
Golgi to plasma membrane transport | ECO |
acceptance of pollen | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...